Class Polyhedron


  • public class Polyhedron
    extends java.lang.Object
    • Constructor Summary

      Constructors 
      Constructor Description
      Polyhedron()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      int[] getElemNos()  
      (package private) java.util.Map<java.lang.String,​java.lang.Object> getInfo​(Viewer vwr, java.lang.String property)  
      short[] getNormixes()  
      (package private) java.lang.String getState​(Viewer vwr)  
      (package private) java.lang.String getSymmetry​(Viewer vwr, boolean withPointGroup)  
      private java.lang.Float getVolume()
      allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
      (package private) void move​(javajs.util.M4 mat, javajs.util.BS bsMoved)  
      (package private) Polyhedron set​(java.lang.String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, javajs.util.BS bsFlat, boolean collapsed, float distanceRef, float pointScale)  
      (package private) Polyhedron setInfo​(Viewer vwr, java.util.Map<java.lang.String,​java.lang.Object> info, Atom[] at)  
      (package private) void setOffset​(javajs.util.P3 value)  
      private int[][] toInt2​(boolean isSV, java.lang.Object o)  
      private float triangleArea​(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)  
      private float triangleVolume​(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Field Detail

      • info

        java.util.Map<java.lang.String,​java.lang.Object> info
      • id

        public java.lang.String id
      • center

        public javajs.util.P3 center
      • centralAtom

        public Atom centralAtom
      • vertices

        public javajs.util.P3[] vertices
      • triangles

        public int[][] triangles
      • faces

        public int[][] faces
      • nVertices

        int nVertices
      • collapsed

        public boolean collapsed
      • bsFlat

        private javajs.util.BS bsFlat
      • distanceRef

        private float distanceRef
      • normals

        private javajs.util.V3[] normals
      • normixes

        private short[] normixes
      • planes

        javajs.util.P4[] planes
      • smiles

        public java.lang.String smiles
      • smarts

        public java.lang.String smarts
      • polySmiles

        public java.lang.String polySmiles
      • pointGroup

        private SymmetryInterface pointGroup
        includes vertices as atoms, with atomic numbers
      • pointGroupFamily

        private SymmetryInterface pointGroupFamily
        includes vertices as generic points
      • volume

        private java.lang.Float volume
      • visible

        boolean visible
      • isFullyLit

        boolean isFullyLit
      • isValid

        public boolean isValid
      • colixEdge

        public short colixEdge
      • visibilityFlags

        public int visibilityFlags
      • colix

        public short colix
      • modelIndex

        public int modelIndex
      • offset

        private javajs.util.P3 offset
      • scale

        public float scale
      • pointScale

        public float pointScale
      • faceTriangles

        private int[][] faceTriangles
      • elemNos

        private int[] elemNos
    • Constructor Detail

      • Polyhedron

        Polyhedron()
    • Method Detail

      • set

        Polyhedron set​(java.lang.String id,
                       int modelIndex,
                       javajs.util.P3 atomOrPt,
                       javajs.util.P3[] points,
                       int nPoints,
                       int vertexCount,
                       int[][] triangles,
                       int triangleCount,
                       int[][] faces,
                       int[][] faceTriangles,
                       javajs.util.V3[] normals,
                       javajs.util.BS bsFlat,
                       boolean collapsed,
                       float distanceRef,
                       float pointScale)
      • setInfo

        Polyhedron setInfo​(Viewer vwr,
                           java.util.Map<java.lang.String,​java.lang.Object> info,
                           Atom[] at)
      • toInt2

        private int[][] toInt2​(boolean isSV,
                               java.lang.Object o)
      • getInfo

        java.util.Map<java.lang.String,​java.lang.Object> getInfo​(Viewer vwr,
                                                                       java.lang.String property)
      • getElemNos

        public int[] getElemNos()
      • getSymmetry

        java.lang.String getSymmetry​(Viewer vwr,
                                     boolean withPointGroup)
      • getVolume

        private java.lang.Float getVolume()
        allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
        Returns:
        volume
      • triangleArea

        private float triangleArea​(int i,
                                   int j,
                                   int k,
                                   javajs.util.V3 vAB,
                                   javajs.util.V3 vAC,
                                   javajs.util.V3 vTemp)
      • triangleVolume

        private float triangleVolume​(int i,
                                     int j,
                                     int k,
                                     javajs.util.V3 vAB,
                                     javajs.util.V3 vAC,
                                     javajs.util.V3 vTemp)
      • getState

        java.lang.String getState​(Viewer vwr)
      • move

        void move​(javajs.util.M4 mat,
                  javajs.util.BS bsMoved)
      • getNormixes

        public short[] getNormixes()
      • setOffset

        void setOffset​(javajs.util.P3 value)