Constant Field Values
Contents
org.jmol.*
-
org.jmol.adapter.readers.cif.CifReader Modifier and Type Constant Field Value private static final byte
ADP_TYPE
47
private static final byte
ALT_ID
15
private static final byte
ANISO_B11
35
private static final byte
ANISO_B12
38
private static final byte
ANISO_B13
39
private static final byte
ANISO_B22
36
private static final byte
ANISO_B23
40
private static final byte
ANISO_B33
37
private static final byte
ANISO_BETA_11
41
private static final byte
ANISO_BETA_12
44
private static final byte
ANISO_BETA_13
45
private static final byte
ANISO_BETA_22
42
private static final byte
ANISO_BETA_23
46
private static final byte
ANISO_BETA_33
43
private static final byte
ANISO_LABEL
20
private static final byte
ANISO_MMCIF_ID
21
private static final byte
ANISO_MMCIF_U11
28
private static final byte
ANISO_MMCIF_U12
31
private static final byte
ANISO_MMCIF_U13
32
private static final byte
ANISO_MMCIF_U22
29
private static final byte
ANISO_MMCIF_U23
33
private static final byte
ANISO_MMCIF_U33
30
private static final byte
ANISO_U11
22
private static final byte
ANISO_U12
25
private static final byte
ANISO_U13
26
private static final byte
ANISO_U22
23
private static final byte
ANISO_U23
27
private static final byte
ANISO_U33
24
private static final byte
ATOM_ID
70
private static final byte
ATOM_TYPE_OXIDATION_NUMBER
1
private static final byte
ATOM_TYPE_RADIUS_BOND
2
private static final byte
ATOM_TYPE_SYMBOL
0
private static final byte
AUTH_ASYM_ID
12
private static final byte
AUTH_ATOM_ID
2
private static final byte
AUTH_COMP_ID
11
private static final byte
AUTH_SEQ_ID
13
private static final byte
B_ISO
10
private static final byte
CARTN_X
6
private static final byte
CARTN_Y
7
private static final byte
CARTN_Z
8
private static final byte
CC_ATOM_CHARGE
51
private static final byte
CC_ATOM_ID
49
private static final byte
CC_ATOM_SYM
50
private static final byte
CC_ATOM_X
52
private static final byte
CC_ATOM_X_IDEAL
55
private static final byte
CC_ATOM_Y
53
private static final byte
CC_ATOM_Y_IDEAL
56
private static final byte
CC_ATOM_Z
54
private static final byte
CC_ATOM_Z_IDEAL
57
private static final byte
CC_COMP_ID
48
private static final byte
CCDC_GEOM_BOND_TYPE
3
private static final byte
CITATION_TITLE
0
private static final byte
DISORDER_ASSEMBLY
58
private static final byte
DISORDER_GROUP
19
private static final byte
DUMMY_ATOM
18
protected static final java.lang.String
FAMILY_ATOM
"_atom_site"
private static final java.lang.String
FAMILY_SGOP
"_space_group_symop"
private static final byte
FRACT_X
3
private static final byte
FRACT_Y
4
private static final byte
FRACT_Z
5
private static final byte
GEOM_BOND_ATOM_SITE_LABEL_1
0
private static final byte
GEOM_BOND_ATOM_SITE_LABEL_2
1
private static final byte
GEOM_BOND_DISTANCE
2
private static final byte
GROUP_PDB
16
private static final byte
INS_CODE
14
private static final byte
LABEL
1
private static final byte
LABEL_ASYM_ID
59
private static final byte
LABEL_ATOM_ID
73
private static final byte
LABEL_COMP_ID
72
private static final byte
LABEL_SEQ_ID
71
private static final byte
MODEL_NO
17
private static final byte
MOMENT_LABEL
63
private static final byte
MOMENT_PRELIM_X
64
private static final byte
MOMENT_PRELIM_Y
65
private static final byte
MOMENT_PRELIM_Z
66
private static final byte
MOMENT_X
67
private static final byte
MOMENT_Y
68
private static final byte
MOMENT_Z
69
protected static final byte
NONE
-1
private static final byte
OCCUPANCY
9
private static final byte
SITE_MULT
61
private static final byte
SUBSYS_ID
60
private static final byte
SYM_EQ_XYZ
4
private static final byte
SYM_MAGN_CENTERING
9
private static final byte
SYM_MAGN_REV
7
private static final byte
SYM_MAGN_REV_PRELIM
6
private static final byte
SYM_MAGN_SSG_ALG
3
private static final byte
SYM_MAGN_SSG_CENT_XYZ
11
private static final byte
SYM_MAGN_SSG_CENTERING
10
private static final byte
SYM_MAGN_SSG_REV
8
private static final byte
SYM_MAGN_XYZ
1
private static final byte
SYM_SSG_ALG
2
private static final byte
SYM_SSG_EQ_XYZ
5
private static final byte
SYM_XYZ
0
private static final byte
THERMAL_TYPE
62
private static final java.lang.String
titleRecords
"__citation_title__publ_section_title__active_magnetic_irreps_details__"
private static final byte
TYPE_SYMBOL
0
private static final byte
U_ISO_OR_EQUIV
34
-
org.jmol.adapter.readers.cif.MMCifReader Modifier and Type Constant Field Value private static final byte
ASSEM_ID
0
private static final byte
ASSEM_LIST
2
private static final byte
ASSEM_OPERS
1
private static final byte
BEG_ASYM_ID
1
private static final byte
BEG_INS_CODE
3
private static final byte
BEG_SEQ_ID
2
private static final byte
CHEM_COMP_BOND_AROMATIC_FLAG
4
private static final byte
CHEM_COMP_BOND_ATOM_ID_1
1
private static final byte
CHEM_COMP_BOND_ATOM_ID_2
2
private static final byte
CHEM_COMP_BOND_ID
0
private static final byte
CHEM_COMP_BOND_VALUE_ORDER
3
private static final byte
CHEM_COMP_ID
0
private static final byte
CHEM_COMP_NAME
1
private static final byte
CONF_TYPE_ID
0
private static final byte
END_ASYM_ID
4
private static final byte
END_INS_CODE
6
private static final byte
END_SEQ_ID
5
private static final java.lang.String
FAMILY_ASSEM_CAT
"_pdbx_struct_assembly_gen."
private static final java.lang.String
FAMILY_CHEMCOMP_CAT
"_chem_comp."
private static final java.lang.String
FAMILY_COMPBOND
"_chem_comp_bond"
private static final java.lang.String
FAMILY_COMPBOND_CAT
"_chem_comp_bond."
private static final java.lang.String
FAMILY_NCS
"_struct_ncs_oper"
private static final java.lang.String
FAMILY_NCS_CAT
"_struct_ncs_oper."
private static final java.lang.String
FAMILY_OPER
"_pdbx_struct_oper_list"
private static final java.lang.String
FAMILY_OPER_CAT
"_pdbx_struct_oper_list."
private static final java.lang.String
FAMILY_SEQUENCEDIF_CAT
"_struct_ref_seq_dif."
private static final java.lang.String
FAMILY_SHEET
"_struct_sheet_range"
private static final java.lang.String
FAMILY_SHEET_CAT
"_struct_sheet_range."
private static final java.lang.String
FAMILY_STRUCSITE
"_struct_site_gen"
private static final java.lang.String
FAMILY_STRUCSITE_CAT
"_struct_site_gen."
private static final java.lang.String
FAMILY_STRUCTCONF
"_struct_conf"
private static final java.lang.String
FAMILY_STRUCTCONF_CAT
"_struct_conf."
private static final java.lang.String
FAMILY_STRUCTCONN
"_struct_conn"
private static final java.lang.String
FAMILY_STRUCTCONN_CAT
"_struct_conn."
private static final byte
HELIX_CLASS
9
private static final byte
OPER_ID
12
private static final byte
OPER_XYZ
13
private static final byte
SERIAL_NO
8
private static final byte
SHEET_ID
0
private static final byte
SITE_ASYM_ID
2
private static final byte
SITE_COMP_ID
1
private static final byte
SITE_ID
0
private static final byte
SITE_INS_CODE
4
private static final byte
SITE_SEQ_ID
3
private static final byte
STRAND_ID
7
private static final byte
STRUCT_CONN_ALT1
4
private static final byte
STRUCT_CONN_ALT2
10
private static final byte
STRUCT_CONN_ASYM1
0
private static final byte
STRUCT_CONN_ASYM2
6
private static final byte
STRUCT_CONN_ATOM1
3
private static final byte
STRUCT_CONN_ATOM2
9
private static final byte
STRUCT_CONN_COMP1
2
private static final byte
STRUCT_CONN_COMP2
8
private static final byte
STRUCT_CONN_ORDER
13
private static final byte
STRUCT_CONN_SEQ1
1
private static final byte
STRUCT_CONN_SEQ2
7
private static final byte
STRUCT_CONN_SYMM1
5
private static final byte
STRUCT_CONN_SYMM2
11
private static final byte
STRUCT_CONN_TYPE
12
private static final byte
STRUCT_ID
7
private static final byte
STRUCT_REF_G1
1
private static final byte
STRUCT_REF_G3
0
-
org.jmol.adapter.readers.cif.MSCifParser Modifier and Type Constant Field Value private static final int
DEPR_FD_COS
73
private static final int
DEPR_FD_SIN
74
private static final int
DEPR_FO_COS
75
private static final int
DEPR_FO_SIN
76
private static final int
DEPR_FU_COS
77
private static final int
DEPR_FU_SIN
78
private static final int
DISP_SAW_AX
20
private static final int
DISP_SAW_AY
21
private static final int
DISP_SAW_AZ
22
private static final int
DISP_SAW_C
23
private static final int
DISP_SAW_W
24
private static final int
DISP_SPEC_LABEL
19
private static final int
FD_ID
41
private static final int
FDP_ID
44
private static final int
FO_ID
42
private static final int
FOP_ID
45
private static final int
FU_ID
43
private static final int
FUP_ID
46
private static final int
FWV_DISP_AXIS
13
private static final int
FWV_DISP_COS
15
private static final int
FWV_DISP_LABEL
12
private static final int
FWV_DISP_MODULUS
17
private static final int
FWV_DISP_PHASE
18
private static final int
FWV_DISP_SEQ_ID
14
private static final int
FWV_DISP_SIN
16
private static final int
FWV_ID
0
private static final int
FWV_OCC_COS
27
private static final int
FWV_OCC_LABEL
25
private static final int
FWV_OCC_MODULUS
29
private static final int
FWV_OCC_PHASE
30
private static final int
FWV_OCC_SEQ_ID
26
private static final int
FWV_OCC_SIN
28
private static final int
FWV_Q_COEF
8
private static final int
FWV_SPIN_AXIS
50
private static final int
FWV_SPIN_COS
52
private static final int
FWV_SPIN_LABEL
49
private static final int
FWV_SPIN_MODULUS
54
private static final int
FWV_SPIN_PHASE
55
private static final int
FWV_SPIN_SEQ_ID
51
private static final int
FWV_SPIN_SIN
53
private static final int
FWV_U_COS
37
private static final int
FWV_U_LABEL
34
private static final int
FWV_U_MODULUS
39
private static final int
FWV_U_PHASE
40
private static final int
FWV_U_SEQ_ID
36
private static final int
FWV_U_SIN
38
private static final int
FWV_U_TENS
35
private static final int
FWV_X
5
private static final int
FWV_Y
6
private static final int
FWV_Z
7
private static final int
JANA_FWV_Q1_COEF
9
private static final int
JANA_FWV_Q2_COEF
10
private static final int
JANA_FWV_Q3_COEF
11
private static final int
JANA_OCC_ABS_LABEL
47
private static final int
JANA_OCC_ABS_O_0
48
private static final int
LEG_DISP_AXIS
63
private static final int
LEG_DISP_COEF
65
private static final int
LEG_DISP_LABEL
62
private static final int
LEG_DISP_ORDER
64
private static final int
LEG_OCC_COEF
72
private static final int
LEG_OCC_LABEL
70
private static final int
LEG_OCC_ORDER
71
private static final int
LEG_U_COEF
69
private static final int
LEG_U_LABEL
66
private static final int
LEG_U_ORDER
68
private static final int
LEG_U_TENS
67
private static final int
NONE
-1
private static final int
OCC_CRENEL_C
32
private static final int
OCC_CRENEL_W
33
private static final int
OCC_SPECIAL_LABEL
31
static final java.lang.String
SEP
"_"
private static final int
SPIN_SAW_AX
57
private static final int
SPIN_SAW_AY
58
private static final int
SPIN_SAW_AZ
59
private static final int
SPIN_SAW_C
60
private static final int
SPIN_SAW_W
61
private static final int
SPIN_SPEC_LABEL
56
private static final int
WV_ID
1
private static final int
WV_X
2
private static final int
WV_Y
3
private static final int
WV_Z
4
-
org.jmol.adapter.readers.cif.MSRdr Modifier and Type Constant Field Value private static final java.lang.String
U_LIST
"U11U22U33U12U13U23UISO"
-
org.jmol.adapter.readers.cif.TopoCifParser Modifier and Type Constant Field Value public static final int
LINK_TYPE_AROM
9
public static final int
LINK_TYPE_BITS
4
public static final int
LINK_TYPE_DELO
11
public static final int
LINK_TYPE_DOUBLE
2
public static final int
LINK_TYPE_GENERIC_LINK
0
public static final int
LINK_TYPE_HBOND
13
public static final int
LINK_TYPE_OCTUPLE
8
public static final int
LINK_TYPE_OTHER
15
public static final int
LINK_TYPE_PI
12
public static final int
LINK_TYPE_POLY
10
public static final int
LINK_TYPE_QUADRUPLE
4
public static final int
LINK_TYPE_QUINTUPLE
5
public static final int
LINK_TYPE_SEPTUPLE
7
public static final int
LINK_TYPE_SEXTUPLE
6
public static final int
LINK_TYPE_SINGLE
1
public static final int
LINK_TYPE_TRIPLE
3
public static final int
LINK_TYPE_VDW
14
private static final byte
topol_atom_atom_label
34
private static final byte
topol_atom_element_symbol
45
private static final byte
topol_atom_fract_x
42
private static final byte
topol_atom_fract_y
43
private static final byte
topol_atom_fract_z
44
private static final byte
topol_atom_id
33
private static final byte
topol_atom_link_id
36
private static final byte
topol_atom_node_id
35
private static final byte
topol_atom_symop_id
37
private static final byte
topol_atom_translation
38
private static final byte
topol_atom_translation_x
39
private static final byte
topol_atom_translation_y
40
private static final byte
topol_atom_translation_z
41
static final int
TOPOL_GROUP
33554432
static final int
TOPOL_LINK
16777216
private static final byte
topol_link_distance
17
private static final byte
topol_link_id
3
private static final byte
topol_link_multiplicity
19
private static final byte
topol_link_net_id
4
private static final byte
topol_link_node_id_1
5
private static final byte
topol_link_node_id_2
6
private static final byte
topol_link_node_label_1_DEPRECATED
56
private static final byte
topol_link_node_label_2_DEPRECATED
57
private static final byte
topol_link_order
21
private static final byte
topol_link_site_symmetry_symop_1_DEPRECATED
46
private static final byte
topol_link_site_symmetry_symop_2_DEPRECATED
50
private static final byte
topol_link_site_symmetry_translation_1_DEPRECATED
54
private static final byte
topol_link_site_symmetry_translation_1_x_DEPRECATED
47
private static final byte
topol_link_site_symmetry_translation_1_y_DEPRECATED
48
private static final byte
topol_link_site_symmetry_translation_1_z_DEPRECATED
49
private static final byte
topol_link_site_symmetry_translation_2_DEPRECATED
55
private static final byte
topol_link_site_symmetry_translation_2_x_DEPRECATED
51
private static final byte
topol_link_site_symmetry_translation_2_y_DEPRECATED
52
private static final byte
topol_link_site_symmetry_translation_2_z_DEPRECATED
53
private static final byte
topol_link_symop_id_1
7
private static final byte
topol_link_symop_id_2
12
private static final byte
topol_link_translation_1
8
private static final byte
topol_link_translation_1_x
9
private static final byte
topol_link_translation_1_y
10
private static final byte
topol_link_translation_1_z
11
private static final byte
topol_link_translation_2
13
private static final byte
topol_link_translation_2_x
14
private static final byte
topol_link_translation_2_y
15
private static final byte
topol_link_translation_2_z
16
private static final byte
topol_link_type
18
private static final byte
topol_link_voronoi_solidangle
20
private static final byte
topol_net_id
0
private static final byte
topol_net_label
1
private static final byte
topol_net_special_details
2
static final int
TOPOL_NODE
67108864
private static final byte
topol_node_fract_x
30
private static final byte
topol_node_fract_y
31
private static final byte
topol_node_fract_z
32
private static final byte
topol_node_id
22
private static final byte
topol_node_label
24
private static final byte
topol_node_net_id
23
private static final byte
topol_node_symop_id
25
private static final byte
topol_node_translation
26
private static final byte
topol_node_translation_x
27
private static final byte
topol_node_translation_y
28
private static final byte
topol_node_translation_z
29
-
org.jmol.adapter.readers.more.ForceFieldReader Modifier and Type Constant Field Value private static final java.lang.String
ffTypes
" CA CB CC CD CE CF CG CH CI CJ CK CM CN CP CQ CR CT CV CW HA HP HC HO HS HW LP NA NB NC NT OH OS OW SH AH BH HT HY AC BC CS OA OB OE OT dw hc hi hn ho hp hs hw hscp htip ca cg ci cn co coh cp cr cs ct c3h c3m c4h c4m na nb nh nho nh+ ni nn np npc nr nt nz oc oe oh op oscp otip sc sh sp br cl ca+ ar si lp nu sz oz az pz ga ge tioc titd li+ na+ rb+ cs+ mg2+ ca2+ ba2+ cu2+ cl- br- so4 sy oy ay ayt nac+ mg2c fe2c mn4c mn3c co2c ni2c lic+ pd2+ ti4c sr2c ca2c cly- hocl py vy nh4+ so4y lioh naoh koh foh cloh beoh al CE1 CF1 CF2 CF3 CG CD2 CH1E CH2E CH3E CM CP3 CPH1 CPH2 CQ66 CR55 CR56 CR66 CS66 CT CT3 CT4 CUA1 CUA2 CUA3 CUY1 CUY2 HA HC HMU HO HT LP NC NC2 NO2 NP NR1 NR2 NR3 NR55 NR56 NR66 NT NX OA OAC OC OE OH2 OK OM OS OSH OSI OT OW PO3 PO4 PT PUA1 PUY1 SE SH1E SK SO1 SO2 SO3 SO4 ST ST2 ST2 br br- br1 cl cl- cl1 cl12 cl13 cl14 cl1p ca+ cu+2 fe+2 mg+2 zn+2 cs+ li+ na+ rb+ al4z si si4 si4c si4z ar he kr ne xe dw hi hw ca cg ci co coh cp cr cs ct ct3 na nb nh nho ni no np nt nt2 nz oa oc oh op os ot sp bt cl\' si4l si5l si5t si6 si6o si\' br ca cc cd ce cf cl cp cq cu cv cx cy ha hc hn ho hp hs na nb nc nd nh oh os pb pc pd pe pf px py sh ss sx sy hn2 ho2 cz oo oz si sio hsi osi "
private static final java.lang.String
secondCharOnly
" AH BH AC BC "
private static final java.lang.String
specialTypes
" IM IP sz az sy ay ayt "
private static final java.lang.String
twoChar
" al al4z ar ba2+ beoh br br- br1 ca+ ca2+ ca2c cl cl\' cl- cl1 cl12 cl13 cl14 cl1p cloh cly- co2c cs+ cu+2 cu2+ fe+2 fe2c ga ge he kr li+ lic+ lioh lp LP mg+2 mg2+ mg2c mn3c mn4c na+ nac+ naoh ne ni2c nu pd2+ rb+ si si\' si4 si4c si4l si4z si5l si5t si6 si6o sio sr2c ti4c tioc titd xe zn+2 "
-
org.jmol.adapter.readers.pdb.PdbReader Modifier and Type Constant Field Value private static final float
_8PI2_
78.95683288574219f
private static final java.lang.String
lineOptions
"ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND SOURCE TITLE SEQADV "
private static final int
MODE_HEX
1
private static final int
MODE_HYBRID36
2
private static final int
MODE_PDB
0
private static final float
RAD_PER_DEG
0.01745329238474369f
-
org.jmol.adapter.readers.pymol.org.jmol.adapter.readers.pymol.PickleReader Modifier and Type Constant Field Value private static final byte
APPEND
97
private static final byte
APPENDS
101
private static final byte
BINFLOAT
71
private static final byte
BINGET
104
private static final byte
BININT
74
private static final byte
BININT1
75
private static final byte
BININT2
77
private static final byte
BINPUT
113
private static final byte
BINSTRING
84
private static final byte
BINUNICODE
88
private static final byte
BUILD
98
private static final byte
EMPTY_DICT
125
private static final byte
EMPTY_LIST
93
private static final byte
EMPTY_TUPLE
41
private static final byte
GLOBAL
99
private static final byte
INT
73
private static final byte
LONG
76
private static final byte
LONG_BINGET
106
private static final byte
LONG_BINPUT
114
private static final byte
MARK
40
private static final byte
NONE
78
private static final byte
OBJ
111
private static final byte
REDUCE
82
private static final byte
SETITEM
115
private static final byte
SETITEMS
117
private static final byte
SHORT_BINSTRING
85
private static final byte
STOP
46
private static final byte
TUPLE
116
-
org.jmol.adapter.readers.pymol.org.jmol.adapter.readers.pymol.PyMOL Modifier and Type Constant Field Value static final int
active_selections
351
static final int
alignment_as_cylinders
692
static final int
all_states
49
static final int
ALTLOC
40
static final int
ambient
7
static final int
ambient_occlusion_mode
702
static final int
ambient_occlusion_scale
703
static final int
ambient_occlusion_smooth
704
static final int
anaglyph_mode
706
static final int
angle_color
575
static final int
angle_label_position
406
static final int
angle_size
405
static final int
animation
388
static final int
animation_duration
389
static final int
ANISOU
45
static final int
antialias
12
static final int
async_builds
506
static final int
ati_bugs
585
static final int
atom_name_wildcard
413
static final int
atom_type_format
660
static final int
auto_classify_atoms
360
static final int
auto_color
238
static final int
auto_color_next
239
static final int
auto_copy_images
557
static final int
auto_defer_atom_count
653
static final int
auto_defer_builds
567
static final int
auto_dss
323
static final int
auto_hide_selections
79
static final int
auto_indicate_flags
147
static final int
auto_number_selections
443
static final int
auto_overlay
603
static final int
auto_remove_hydrogens
158
static final int
auto_rename_duplicate_objects
561
static final int
auto_sculpt
162
static final int
auto_show_lines
51
static final int
auto_show_nonbonded
72
static final int
auto_show_selections
78
static final int
auto_show_spheres
420
static final int
auto_zoom
60
static final int
autoclose_dialogs
661
static final int
backface_cull
75
static final int
batch_prefix
187
static final int
BATOM1
1
static final int
BATOM2
2
static final int
BFACTOR
4
static final int
bg_gradient
662
static final int
bg_image_filename
712
static final int
bg_image_linear
715
static final int
bg_image_mode
713
static final int
bg_image_tilesize
714
static final int
bg_rgb
6
static final int
bg_rgb_bottom
664
static final int
bg_rgb_top
663
static final int
BHASSETTING
6
static final int
BID
4
static final int
BONDED
22
static final int
bonding_vdw_cutoff
0
static final int
BONMASK
47
static final int
BORDER
3
static final int
BUNIQUEID
5
static final int
button_mode
63
static final int
button_mode_name
330
static final int
cache_display
73
static final int
cache_frames
31
static final int
cache_max
578
static final int
cache_memory
264
static final int
cache_mode
573
static final int
CARTOON
30
static final int
cartoon_color
236
static final int
cartoon_cylindrical_helices
180
static final int
cartoon_debug
105
static final int
cartoon_discrete_colors
125
static final int
cartoon_dumbbell_length
115
static final int
cartoon_dumbbell_radius
117
static final int
cartoon_dumbbell_width
116
static final int
cartoon_fancy_helices
118
static final int
cartoon_fancy_sheets
119
static final int
cartoon_flat_cycles
260
static final int
cartoon_flat_sheets
113
static final int
cartoon_helix_radius
181
static final int
cartoon_highlight_color
241
static final int
cartoon_ladder_color
450
static final int
cartoon_ladder_mode
448
static final int
cartoon_ladder_radius
449
static final int
cartoon_loop_cap
432
static final int
cartoon_loop_quality
93
static final int
cartoon_loop_radius
92
static final int
cartoon_nucleic_acid_as_cylinders
693
static final int
cartoon_nucleic_acid_color
451
static final int
cartoon_nucleic_acid_mode
361
static final int
cartoon_oval_length
100
static final int
cartoon_oval_quality
102
static final int
cartoon_oval_width
101
static final int
cartoon_power
94
static final int
cartoon_power_b
95
static final int
cartoon_putty_quality
378
static final int
cartoon_putty_radius
377
static final int
cartoon_putty_range
382
static final int
cartoon_putty_scale_max
380
static final int
cartoon_putty_scale_min
379
static final int
cartoon_putty_scale_power
381
static final int
cartoon_putty_transform
581
static final int
cartoon_rect_length
96
static final int
cartoon_rect_width
97
static final int
cartoon_refine
123
static final int
cartoon_refine_normals
112
static final int
cartoon_refine_tips
124
static final int
cartoon_ring_color
429
static final int
cartoon_ring_finder
430
static final int
cartoon_ring_mode
427
static final int
cartoon_ring_radius
508
static final int
cartoon_ring_transparency
452
static final int
cartoon_ring_width
428
static final int
cartoon_round_helices
111
static final int
cartoon_sampling
91
static final int
cartoon_side_chain_helper
383
static final int
cartoon_smooth_cycles
259
static final int
cartoon_smooth_first
257
static final int
cartoon_smooth_last
258
static final int
cartoon_smooth_loops
114
static final int
cartoon_throw
122
static final int
cartoon_trace_atoms
269
static final int
cartoon_transparency
279
static final int
cartoon_tube_cap
431
static final int
cartoon_tube_quality
104
static final int
cartoon_tube_radius
103
static final int
cartoon_use_shader
643
static final int
cavity_cull
13
static final int
cgo_debug
674
static final int
cgo_dot_radius
303
static final int
cgo_dot_width
302
static final int
cgo_ellipsoid_quality
564
static final int
cgo_lighting
671
static final int
cgo_line_radius
130
static final int
cgo_line_width
129
static final int
cgo_ray_width_scale
109
static final int
cgo_shader_ub_color
669
static final int
cgo_shader_ub_flags
694
static final int
cgo_shader_ub_normal
670
static final int
cgo_sphere_quality
189
static final int
cgo_transparency
441
static final int
cgo_use_shader
668
static final int
CHAIN
34
static final int
CHEMFLAG
43
static final int
clamp_colors
214
static final int
clean_electro_mode
615
static final int
COLOR
9
static final int
COLOR_BACK
-7
static final int
COLOR_BLACK
1
static final int
COLOR_FRONT
-6
static final int
cone_quality
583
static final int
connect_bonded
487
static final int
connect_cutoff
182
static final int
connect_mode
179
static final int
coulomb_cutoff
367
static final int
coulomb_dielectric
243
static final int
coulomb_units_factor
242
static final int
cull_spheres
33
static final int
CUSTOM
18
static final int
CUSTOMTYPE
2
static final int
cylinder_shader_ff_workaround
697
static final int
cylinders_shader_filter_faces
687
static final int
dash_as_cylinders
684
static final int
dash_color
574
static final int
dash_gap
59
static final int
dash_length
58
static final int
dash_radius
108
static final int
dash_round_ends
280
static final int
dash_use_shader
683
static final int
dash_width
107
static final int
debug_pick
209
static final int
default_2fofc_map_rep
659
static final int
default_buster_names
657
static final int
default_fofc_map_rep
658
static final int
default_phenix_names
655
static final int
default_phenix_no_fill_names
656
static final int
default_refmac_names
654
static final int
defer_builds_mode
409
static final int
defer_updates
304
static final int
depth_cue
84
static final int
dihedral_color
576
static final int
dihedral_label_position
408
static final int
dihedral_size
407
static final int
direct
8
static final int
DISCRETESTATE
14
static final int
dist_counter
57
static final int
distance_exclusion
460
static final int
dot_as_spheres
701
static final int
dot_color
210
static final int
dot_density
2
static final int
dot_hydrogens
28
static final int
dot_lighting
336
static final int
dot_mode
3
static final int
dot_normals
332
static final int
dot_radius
29
static final int
dot_solvent
206
static final int
dot_use_shader
700
static final int
dot_width
77
static final int
draw_frames
436
static final int
draw_mode
614
static final int
dump_binary
749
static final int
dynamic_measures
637
static final int
dynamic_width
610
static final int
dynamic_width_factor
611
static final int
dynamic_width_max
613
static final int
dynamic_width_min
612
static final int
edit_light
707
static final int
editor_auto_dihedral
416
static final int
editor_auto_origin
439
static final int
editor_bond_cycle_mode
633
static final int
editor_label_fragments
321
static final int
ELECRADIUS
15
static final int
ELEM
37
static final int
ellipsoid_color
570
static final int
ellipsoid_probability
568
static final int
ellipsoid_quality
563
static final int
ellipsoid_scale
569
static final int
ellipsoid_transparency
571
static final int
excl_display_lists_shaders
682
static final int
fast_idle
54
static final int
fetch_host
636
static final int
fetch_path
507
static final int
field_of_view
152
static final int
fit_iterations
185
static final int
fit_kabsch
608
static final int
fit_tolerance
186
static final int
FLAGS
11
static final int
float_labels
232
static final int
fog
88
static final int
fog_start
192
static final int
FORMALCHARGE
28
static final int
frame
194
static final int
full_screen
142
static final int
gamma
76
static final int
gaussian_b_adjust
255
static final int
gaussian_b_floor
272
static final int
gaussian_resolution
271
static final int
GEOM
31
static final int
geometry_export_mode
586
static final int
gl_ambient
14
static final int
gradient_max_length
539
static final int
gradient_min_length
540
static final int
gradient_min_slope
541
static final int
gradient_normal_min_dot
542
static final int
gradient_spacing
544
static final int
gradient_step_size
543
static final int
gradient_symmetry
545
static final int
grid_max
580
static final int
grid_mode
577
static final int
grid_slot
579
static final int
group_arrow_prefix
547
static final int
group_auto_mode
537
static final int
group_full_member_names
538
static final int
h_bond_cone
286
static final int
h_bond_cutoff_center
282
static final int
h_bond_cutoff_edge
283
static final int
h_bond_exclusion
461
static final int
h_bond_from_proton
556
static final int
h_bond_max_angle
281
static final int
h_bond_power_a
284
static final int
h_bond_power_b
285
static final int
half_bonds
45
static final int
hash_max
22
static final int
HASSETTING
27
static final int
HBACCEPT
26
static final int
HBAMASK
50
static final int
HBDMASK
49
static final int
HBDONOR
25
static final int
heavy_neighbor_cutoff
639
static final int
HETATM
21
static final int
HETMASK
46
static final int
hide_long_bonds
560
static final int
hide_underscore_names
458
static final int
ID
10
static final int
idle_delay
52
static final int
ignore_case
414
static final int
ignore_pdb_segi
120
static final int
image_copy_always
601
static final int
image_dots_per_inch
434
static final int
INIT
710
static final int
INSCODE
42
static final int
internal_feedback
128
static final int
internal_gui
99
static final int
internal_gui_control_size
322
static final int
internal_gui_mode
341
static final int
internal_gui_width
98
static final int
internal_prompt
313
static final int
isomesh_auto_state
89
static final int
keep_alive
607
static final int
LABEL
19
static final int
label_anchor
635
static final int
label_angle_digits
531
static final int
label_color
66
static final int
label_digits
529
static final int
label_dihedral_digits
532
static final int
label_distance_digits
530
static final int
label_font_id
328
static final int
label_outline_color
467
static final int
label_position
471
static final int
label_shadow_mode
462
static final int
label_size
453
static final int
legacy_mouse_zoom
442
static final int
legacy_vdw_radii
177
static final int
LEN
0
static final int
light
10
static final int
light_count
455
static final int
light2
456
static final int
light3
457
static final int
light4
463
static final int
light5
464
static final int
light6
465
static final int
light7
466
static final int
light8
489
static final int
light9
490
static final int
line_as_cylinders
679
static final int
line_color
526
static final int
line_radius
110
static final int
line_smooth
43
static final int
line_stick_helper
391
static final int
line_use_shader
645
static final int
line_width
44
static final int
log_box_selections
133
static final int
log_conformations
134
static final int
logging
131
static final int
map_auto_expand_sym
600
static final int
MASK
24
static final int
MASMASK
48
static final int
matrix_mode
438
static final int
max_threads
261
static final int
max_triangles
83
static final int
max_ups
602
static final int
mesh_as_cylinders
678
static final int
mesh_carve_cutoff
591
static final int
mesh_carve_selection
589
static final int
mesh_carve_state
590
static final int
mesh_clear_cutoff
594
static final int
mesh_clear_selection
592
static final int
mesh_clear_state
593
static final int
mesh_color
146
static final int
mesh_cutoff
588
static final int
mesh_grid_max
595
static final int
mesh_lighting
337
static final int
mesh_mode
145
static final int
mesh_negative_color
536
static final int
mesh_negative_visible
535
static final int
mesh_normals
334
static final int
mesh_quality
204
static final int
mesh_radius
74
static final int
mesh_skip
528
static final int
mesh_solvent
205
static final int
mesh_type
335
static final int
mesh_use_shader
672
static final int
mesh_width
90
static final int
min_mesh_spacing
1
static final int
MMSTEREO
29
static final int
moe_separate_chains
558
static final int
motion_bias
628
static final int
motion_hand
631
static final int
motion_linear
630
static final int
motion_power
627
static final int
motion_simple
629
static final int
mouse_grid
587
static final int
mouse_limit
211
static final int
mouse_restart_movie_delay
404
static final int
mouse_scale
212
static final int
mouse_selection_mode
354
static final int
mouse_wheel_scale
523
static final int
mouse_z_scale
619
static final int
movie_animate_by_frame
565
static final int
movie_auto_interpolate
621
static final int
movie_auto_store
620
static final int
movie_delay
16
static final int
movie_fps
550
static final int
movie_loop
299
static final int
movie_panel
618
static final int
movie_panel_row_height
622
static final int
movie_quality
634
static final int
movie_rock
572
static final int
multiplex
385
static final int
NAME
36
static final int
nb_spheres_quality
689
static final int
nb_spheres_size
688
static final int
nb_spheres_use_shader
690
static final int
neighbor_cutoff
638
static final int
no_idle
53
static final int
nonbonded_as_cylinders
686
static final int
nonbonded_size
65
static final int
nonbonded_transparency
524
static final int
nonbonded_use_shader
685
static final int
normal_workaround
40
static final int
normalize_ccp4_maps
126
static final int
normalize_grd_maps
314
static final int
normalize_o_maps
305
static final int
nvidia_bugs
433
static final int
OBJECT_ALIGNMENT
11
static final int
OBJECT_CALCULATOR
9
static final int
OBJECT_CALLBACK
5
static final int
OBJECT_CGO
6
static final int
OBJECT_GADGET
8
static final int
OBJECT_GROUP
12
static final int
OBJECT_MAPDATA
2
static final int
OBJECT_MAPMESH
3
static final int
OBJECT_MEASURE
4
static final int
OBJECT_MOLECULE
1
static final int
OBJECT_SELECTION
-1
static final int
OBJECT_SLICE
10
static final int
OBJECT_SURFACE
7
static final int
OCCUPANCY
5
static final int
offscreen_rendering_for_antialiasing
695
static final int
offscreen_rendering_multiplier
696
static final int
opaque_background
435
static final int
orthoscopic
23
static final int
overlay
61
static final int
overlay_lines
311
static final int
PARTIALCHARGE
7
static final int
pdb_conect_all
329
static final int
pdb_discrete_chains
479
static final int
pdb_echo_tags
486
static final int
pdb_formal_charges
584
static final int
pdb_hetatm_guess_valences
562
static final int
pdb_hetatm_sort
267
static final int
pdb_honor_model_number
424
static final int
pdb_ignore_conect
632
static final int
pdb_insertions_go_first
307
static final int
pdb_insure_orthogonal
374
static final int
pdb_literal_names
190
static final int
pdb_no_end_record
301
static final int
pdb_reformat_names_mode
326
static final int
pdb_retain_ids
300
static final int
pdb_standard_order
256
static final int
pdb_truncate_residue_name
399
static final int
pdb_unbond_cations
480
static final int
pdb_use_ter_records
268
static final int
pickable
50
static final int
png_file_gamma
320
static final int
png_screen_gamma
319
static final int
polar_neighbor_cutoff
640
static final int
power
11
static final int
pqr_workarounds
387
static final int
presentation
397
static final int
presentation_auto_quit
415
static final int
presentation_auto_start
417
static final int
presentation_mode
398
static final int
preserve_chempy_ids
154
static final int
PRIORITY
3
static final int
PROTEKTED
44
static final int
PROTONS
33
static final int
pymol_space_max_blue
217
static final int
pymol_space_max_green
216
static final int
pymol_space_max_red
215
static final int
pymol_space_min_factor
218
static final int
raise_exceptions
159
static final int
ramp_blend_nearby_colors
566
static final int
RANK
16
static final int
rank_assisted_sorts
425
static final int
ray_blend_blue
318
static final int
ray_blend_colors
315
static final int
ray_blend_green
317
static final int
ray_blend_red
316
static final int
ray_clip_shadows
522
static final int
ray_color_ramps
509
static final int
ray_default_renderer
151
static final int
ray_direct_shade
375
static final int
ray_hint_camera
510
static final int
ray_hint_shadow
511
static final int
ray_improve_shadows
149
static final int
ray_interior_color
240
static final int
ray_interior_mode
476
static final int
ray_interior_reflect
340
static final int
ray_interior_shadows
244
static final int
ray_interior_texture
245
static final int
ray_label_specular
527
static final int
ray_legacy_lighting
477
static final int
ray_max_passes
350
static final int
ray_opaque_background
137
static final int
ray_orthoscopic
392
static final int
ray_oversample_cutoff
270
static final int
ray_pixel_scale
327
static final int
ray_scatter
555
static final int
ray_shadow_decay_factor
475
static final int
ray_shadow_decay_range
491
static final int
ray_shadow_fudge
207
static final int
ray_shadows
195
static final int
ray_spec_local
525
static final int
ray_texture
139
static final int
ray_texture_settings
140
static final int
ray_trace_color
546
static final int
ray_trace_depth_factor
472
static final int
ray_trace_disco_factor
474
static final int
ray_trace_fog
67
static final int
ray_trace_fog_start
69
static final int
ray_trace_frames
30
static final int
ray_trace_gain
469
static final int
ray_trace_mode
468
static final int
ray_trace_persist_cutoff
553
static final int
ray_trace_slope_factor
473
static final int
ray_trace_trans_cutoff
552
static final int
ray_transparency_contrast
352
static final int
ray_transparency_oblique
551
static final int
ray_transparency_oblique_power
554
static final int
ray_transparency_shadows
199
static final int
ray_transparency_spec_cut
312
static final int
ray_transparency_specular
201
static final int
ray_triangle_fudge
208
static final int
ray_volume
665
static final int
reflect
9
static final int
reflect_power
153
static final int
render_as_cylinders
691
static final int
REP_ANGLES
17
static final int
REP_CALLBACK
14
static final int
REP_CARTOON
5
static final int
REP_CELL
12
static final int
REP_CGO
13
static final int
REP_DASHES
10
static final int
REP_DIHEDRALS
18
static final int
REP_DOTS
9
static final int
REP_ELLIPSOID
19
static final int
REP_EXTENT
15
static final int
REP_JMOL_MAX
23
static final int
REP_JMOL_PUTTY
22
static final int
REP_JMOL_TRACE
21
static final int
REP_LABELS
3
static final int
REP_LINES
7
static final int
REP_MAX
21
static final int
REP_MESH
8
static final int
REP_NBSPHERES
4
static final int
REP_NONBONDED
11
static final int
REP_RIBBON
6
static final int
REP_SLICE
16
static final int
REP_SPHERES
1
static final int
REP_STICKS
0
static final int
REP_SURFACE
2
static final int
REP_VOLUME
20
static final int
RESI
38
static final int
RESN
41
static final int
RESV
1
static final int
retain_order
266
static final int
ribbon_as_cylinders
680
static final int
ribbon_color
235
static final int
ribbon_nucleic_acid_mode
426
static final int
ribbon_power
17
static final int
ribbon_power_b
18
static final int
ribbon_radius
20
static final int
ribbon_sampling
19
static final int
ribbon_side_chain_helper
393
static final int
ribbon_smooth
237
static final int
ribbon_throw
121
static final int
ribbon_trace_atoms
196
static final int
ribbon_transparency
666
static final int
ribbon_use_shader
681
static final int
ribbon_width
106
static final int
robust_logs
132
static final int
rock
582
static final int
rock_delay
56
static final int
roving_byres
226
static final int
roving_cartoon
228
static final int
roving_delay
224
static final int
roving_detail
233
static final int
roving_isomesh
252
static final int
roving_isosurface
253
static final int
roving_labels
223
static final int
roving_lines
220
static final int
roving_map1_level
249
static final int
roving_map1_name
246
static final int
roving_map2_level
250
static final int
roving_map2_name
247
static final int
roving_map3_level
251
static final int
roving_map3_name
248
static final int
roving_nb_spheres
234
static final int
roving_nonbonded
231
static final int
roving_origin
219
static final int
roving_origin_z
308
static final int
roving_origin_z_cushion
309
static final int
roving_polar_contacts
229
static final int
roving_polar_cutoff
230
static final int
roving_ribbon
227
static final int
roving_selection
225
static final int
roving_spheres
222
static final int
roving_sticks
221
static final int
save_pdb_ss
183
static final int
scene_animation
390
static final int
scene_animation_duration
411
static final int
scene_buttons
599
static final int
scene_buttons_mode
598
static final int
scene_current_name
396
static final int
scene_frame_mode
623
static final int
scene_loop
400
static final int
scene_restart_movie_delay
403
static final int
scenes_changed
254
static final int
sculpt_angl_weight
168
static final int
sculpt_auto_center
478
static final int
sculpt_avd_excl
505
static final int
sculpt_avd_gap
503
static final int
sculpt_avd_range
504
static final int
sculpt_avd_weight
502
static final int
sculpt_bond_weight
167
static final int
sculpt_field_mask
174
static final int
sculpt_hb_overlap
175
static final int
sculpt_hb_overlap_base
176
static final int
sculpt_line_weight
184
static final int
sculpt_max_max
500
static final int
sculpt_max_min
499
static final int
sculpt_max_scale
497
static final int
sculpt_max_weight
498
static final int
sculpt_memory
178
static final int
sculpt_min_max
496
static final int
sculpt_min_min
495
static final int
sculpt_min_scale
493
static final int
sculpt_min_weight
494
static final int
sculpt_nb_interval
273
static final int
sculpt_plan_weight
170
static final int
sculpt_pyra_inv_weight
606
static final int
sculpt_pyra_weight
169
static final int
sculpt_tors_tolerance
275
static final int
sculpt_tors_weight
274
static final int
sculpt_tri_max
484
static final int
sculpt_tri_min
483
static final int
sculpt_tri_mode
485
static final int
sculpt_tri_scale
481
static final int
sculpt_tri_weight
482
static final int
sculpt_vdw_scale
163
static final int
sculpt_vdw_scale14
164
static final int
sculpt_vdw_vis_max
447
static final int
sculpt_vdw_vis_mid
446
static final int
sculpt_vdw_vis_min
445
static final int
sculpt_vdw_vis_mode
444
static final int
sculpt_vdw_weight
165
static final int
sculpt_vdw_weight14
166
static final int
sculpting
161
static final int
sculpting_cycles
171
static final int
sdof_drag_scale
597
static final int
secondary_structure
157
static final int
security
197
static final int
SEGI
35
static final int
sel_counter
5
static final int
selection_overlay
81
static final int
selection_round_points
459
static final int
selection_visible_only
470
static final int
selection_width
80
static final int
selection_width_max
394
static final int
selection_width_scale
395
static final int
seq_view
353
static final int
seq_view_alignment
513
static final int
seq_view_color
362
static final int
seq_view_discrete_by_state
410
static final int
seq_view_fill_char
516
static final int
seq_view_fill_color
517
static final int
seq_view_format
357
static final int
seq_view_label_color
518
static final int
seq_view_label_mode
363
static final int
seq_view_label_spacing
355
static final int
seq_view_label_start
356
static final int
seq_view_location
358
static final int
seq_view_overlay
359
static final int
seq_view_unaligned_color
515
static final int
seq_view_unaligned_mode
514
static final int
session_cache_optimize
596
static final int
session_changed
521
static final int
session_compression
549
static final int
session_file
440
static final int
session_migration
333
static final int
session_version_check
200
static final int
SETMASK
51
static final int
shader_path
648
static final int
shininess
86
static final int
show_alpha_checker
437
static final int
show_frame_rate
617
static final int
show_progress
262
static final int
simplify_display_lists
265
static final int
single_image
15
static final int
slice_dynamic_grid
372
static final int
slice_dynamic_grid_resolution
373
static final int
slice_grid
371
static final int
slice_height_map
370
static final int
slice_height_scale
369
static final int
slice_track_camera
368
static final int
slow_idle
55
static final int
smooth_color_triangle
150
static final int
smooth_half_bonds
705
static final int
solvent_radius
4
static final int
spec_count
492
static final int
spec_direct
454
static final int
spec_direct_power
488
static final int
spec_power
25
static final int
spec_reflect
24
static final int
specular
85
static final int
specular_intensity
310
static final int
sphere_color
173
static final int
sphere_mode
421
static final int
sphere_point_max_size
422
static final int
sphere_point_size
423
static final int
sphere_quality
87
static final int
sphere_scale
155
static final int
sphere_solvent
203
static final int
sphere_transparency
172
static final int
sphere_use_shader
646
static final int
spheroid_fill
71
static final int
spheroid_scale
68
static final int
spheroid_smooth
70
static final int
ss_helix_phi_exclude
292
static final int
ss_helix_phi_include
291
static final int
ss_helix_phi_target
290
static final int
ss_helix_psi_exclude
289
static final int
ss_helix_psi_include
288
static final int
ss_helix_psi_target
287
static final int
ss_strand_phi_exclude
298
static final int
ss_strand_phi_include
297
static final int
ss_strand_phi_target
296
static final int
ss_strand_psi_exclude
295
static final int
ss_strand_psi_include
294
static final int
ss_strand_psi_target
293
static final int
SSTYPE
39
static final int
state
193
static final int
state_counter_mode
667
static final int
static_singletons
82
static final int
stereo
365
static final int
stereo_angle
41
static final int
stereo_double_pump_mono
202
static final int
stereo_dynamic_strength
609
static final int
stereo_mode
188
static final int
stereo_shift
42
static final int
stick_as_cylinders
677
static final int
stick_ball
276
static final int
stick_ball_color
604
static final int
stick_ball_ratio
277
static final int
stick_color
376
static final int
stick_debug
673
static final int
stick_fixed_radius
278
static final int
stick_good_geometry
676
static final int
stick_h_scale
605
static final int
stick_nub
48
static final int
stick_overlap
47
static final int
stick_quality
46
static final int
stick_radius
21
static final int
stick_round_nub
675
static final int
stick_transparency
198
static final int
stick_use_shader
644
static final int
stick_valence_scale
512
static final int
stop_on_exceptions
160
static final int
suppress_hidden
548
static final int
surface_best
36
static final int
surface_carve_cutoff
344
static final int
surface_carve_normal_cutoff
519
static final int
surface_carve_selection
342
static final int
surface_carve_state
343
static final int
surface_cavity_cutoff
626
static final int
surface_cavity_mode
624
static final int
surface_cavity_radius
625
static final int
surface_circumscribe
501
static final int
surface_clear_cutoff
347
static final int
surface_clear_selection
345
static final int
surface_clear_state
346
static final int
surface_color
144
static final int
surface_color_smoothing
698
static final int
surface_color_smoothing_threshold
699
static final int
surface_debug
148
static final int
surface_miserable
136
static final int
surface_mode
143
static final int
surface_negative_color
534
static final int
surface_negative_visible
533
static final int
surface_normal
37
static final int
surface_optimize_subsets
384
static final int
surface_poor
127
static final int
surface_proximity
39
static final int
surface_quality
38
static final int
surface_ramp_above_mode
364
static final int
surface_residue_cutoff
641
static final int
surface_solvent
338
static final int
surface_trim_cutoff
348
static final int
surface_trim_factor
349
static final int
surface_type
331
static final int
surface_use_shader
642
static final int
suspend_undo
708
static final int
suspend_undo_atom_count
709
static final int
suspend_updates
141
static final int
swap_dsn6_bytes
306
static final int
sweep_angle
26
static final int
sweep_mode
401
static final int
sweep_phase
402
static final int
sweep_speed
27
static final int
test1
34
static final int
test2
35
static final int
text
62
static final int
TEXTTYPE
17
static final int
texture_fonts
386
static final int
trace_atoms_mode
520
static final int
transparency
138
static final int
transparency_global_sort
559
static final int
transparency_mode
213
static final int
transparency_picking_mode
324
static final int
triangle_max_passes
339
static final int
trim_dots
32
static final int
two_sided_lighting
156
static final int
UNIQUEID
13
static final int
unused_boolean_def_true
419
static final int
use_display_lists
263
static final int
use_shaders
647
static final int
valence
64
static final int
VALENCE
32
static final int
valence_mode
616
static final int
valence_size
135
static final int
validate_object_names
418
static final int
VDW
6
static final int
virtual_trackball
325
static final int
VISREP
20
static final int
volume_bit_depth
649
static final int
volume_color
650
static final int
volume_data_range
652
static final int
volume_layers
651
static final int
wildcard
412
static final int
wizard_prompt_mode
366
static final int
wrap_output
191
-
org.jmol.adapter.readers.pymol.PyMOLReader Modifier and Type Constant Field Value private static final int
MIN_RESNO
-1000
-
org.jmol.adapter.readers.quantum.CsfReader Modifier and Type Constant Field Value private static final byte
ANUM
2
private static final byte
BFXN_ANGL
6
private static final byte
BTYPE
1
private static final byte
CHRG
3
private static final byte
COEF_INDICES
5
private static final byte
CONTRACTIONS
8
private static final byte
DIPOLE
3
private static final byte
EIG_VAL
1
private static final byte
EIG_VEC
3
private static final byte
EIG_VEC_COMPRESSED
4
private static final byte
GTO_EXP
9
private static final byte
ID
-1
private static final byte
MO_OCC
2
private static final byte
NORMAL_MODE
1
private static final byte
objCls1
1
private static final byte
objCls2
3
private static final byte
objID1
2
private static final byte
objID2
4
private static final byte
PCHRG
5
private static final byte
SHELL
10
private static final byte
STO_EXP
7
private static final byte
SYM
1
private static final byte
VIB_ENERGY
2
private static final byte
XYZ
4
-
org.jmol.adapter.readers.quantum.GaussianReader Modifier and Type Constant Field Value private static final int
STD_ORIENTATION_ATOMIC_NUMBER_OFFSET
1
-
org.jmol.adapter.readers.quantum.JaguarReader Modifier and Type Constant Field Value private static final float
ROOT3
1.7320507764816284f
-
org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.MopacSlaterReader Modifier and Type Constant Field Value protected static final float
MIN_COEF
9.999999747378752E-5f
public static final java.lang.String
MOPAC_TYPES
"AM1 MNDO PM3 PM6 PM7 RM1"
-
org.jmol.adapter.readers.quantum.MOReader Modifier and Type Constant Field Value private static final java.lang.String
DC_LIST
"(D1) (D4) (D6) (D2) (D3) (D5)"
private static final java.lang.String
DS_LIST
"(D5) (D2) (D3) (D4) (D1)"
private static final java.lang.String
FS_LIST
"(F1) (F2) (F3) (F4) (F5) (F6) (F7)"
protected final int
HEADER_GAMESS_OCCUPANCIES
2
protected final int
HEADER_GAMESS_ORIGINAL
1
protected final int
HEADER_GAMESS_UK_MO
3
protected final int
HEADER_NONE
0
private static final java.lang.String
P_LIST
"(PX) (PY) (PZ)"
-
org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.SlaterReader Modifier and Type Constant Field Value private static final double
_1_4pi
0.07957747154594767
-
org.jmol.adapter.readers.simple.FAHReader Modifier and Type Constant Field Value static final java.lang.String
note
" -- FAH:: is required for Frame files but not the Top file.\n -- automatic calculation of structure using DSSP\n -- Both files are required; three load options:\n \n LOAD FILES \"ViewerTop.json\" + \"ViewerFrame22.json\" // explicit joining to two files\n \n LOAD ViewerTop.json; \n LOAD XYZ FAH::ViewerFrame22.json // first the atoms, then the coordinates\n \n LOAD FAH::ViewerFrame22.json // just the coordinates with associated ViewerTop.json assumed present\n \n -- Subsequent calls to LOAD XYZ will replace coordinates and recalculate DSSP only.\n\n LOAD ViewerTop.json; \n LOAD XYZ FAH::ViewerFrame0.json \n delay 1.0\n LOAD XYZ FAH::ViewerFrame22.json \n \n"
-
org.jmol.adapter.readers.spartan.SpartanSmolReader Modifier and Type Constant Field Value private static final java.lang.String
endCheck
"END Directory Entry "
-
org.jmol.adapter.readers.xml.XmlArgusReader Modifier and Type Constant Field Value private static final int
ATOM
2
private static final int
BOND
3
private static final int
MOLECULE
1
private static final int
TRANSFORMMAT
4
private static final int
UNSET
0
-
org.jmol.adapter.readers.xml.XmlCmlReader Modifier and Type Constant Field Value protected static final int
ASSOCIATION
19
protected static final int
CML
1
protected static final int
CRYSTAL
2
protected static final int
CRYSTAL_SCALAR
3
protected static final int
CRYSTAL_SYMMETRY
4
protected static final int
CRYSTAL_SYMMETRY_TRANSFORM3
5
protected static final int
LATTICE_VECTOR
18
protected static final int
MODULE
16
protected static final int
MOLECULE
6
protected static final int
MOLECULE_ATOM
8
protected static final int
MOLECULE_ATOM_ARRAY
7
protected static final int
MOLECULE_ATOM_BUILTIN
14
protected static final int
MOLECULE_ATOM_SCALAR
9
protected static final int
MOLECULE_BOND
11
protected static final int
MOLECULE_BOND_ARRAY
10
protected static final int
MOLECULE_BOND_BUILTIN
15
protected static final int
MOLECULE_BOND_STEREO
12
protected static final int
MOLECULE_FORMULA
13
protected static final int
START
0
protected static final int
SYMMETRY
17
-
org.jmol.adapter.readers.xtal.CastepReader Modifier and Type Constant Field Value private static final float
RAD_TO_DEG
57.295780181884766f
private static final double
TWOPI
6.283185307179586
-
org.jmol.adapter.readers.xtal.CgdReader Modifier and Type Constant Field Value private static final java.lang.String
SG_ALIASES
";P2=P121;P21=P1211;C2=C121;A2=A121;I2=I121;Pm=P1m1;Pc=P1c1;Pn=P1n1;Pa=P1a1;Cm=C1m1;Am=A1m1;Im=I1m1;Cc=C1c1;An=A1n1;Ia=I1a1;Aa=A1a1;Cn=C1n1;Ic=I1c1;P2/m=P12/m1;P21/m=P121/m1;C2/m=C12/m1;A2/m=A12/m1;I2/m=I12/m1;P2/c=P12/c1;P2/n=P12/n1;P2/a=P12/a1;P21/c=P121/c1;P21/n=P121/n1;P21/a=P121/a1;C2/c=C12/c1;A2/n=A12/n1;I2/a=I12/a1;A2/a=A12/a1;C2/n=C12/n1;I2/c=I12/c1;Pm3=Pm-3;Pn3=Pn-3;Fm3=Fm-3;Fd3=Fd-3;Im3=Im-3;Pa3=Pa-3;Ia3=Ia-3;Pm3m=Pm-3m;Pn3n=Pn-3n;Pm3n=Pm-3n;Pn3m=Pn-3m;Fm3m=Fm-3m;Fm3c=Fm-3c;Fd3m=Fd-3m;Fd3c=Fd-3c;Im3m=Im-3m;Ia3d=Ia-3d;"
-
org.jmol.adapter.readers.xtal.CrystalReader Modifier and Type Constant Field Value private static final int
STATE_FREQ
6
private static final int
STATE_INPUT
1
private static final int
STATE_INPUT_FROM
2
private static final int
STATE_NONE
0
private static final int
STATE_OPT_FINAL
5
private static final int
STATE_OPT_POINT
4
private static final int
STATE_WAVEFUNCTION
3
-
org.jmol.adapter.readers.xtal.JanaReader Modifier and Type Constant Field Value static final int
CELL
5
static final int
END
35
static final int
LATT
20
static final int
NDIM
10
static final int
QI
15
static final java.lang.String
records
"tit cell ndim qi lat sym spg end wma"
static final int
SPG
30
static final int
SYM
25
static final int
TITLE
0
public static final java.lang.String
U_LIST
"U11U22U33U12U13U23UISO"
static final int
WMATRIX
40
-
org.jmol.adapter.readers.xtal.MagresReader Modifier and Type Constant Field Value private static final int
BLOCK_ATOMS
1
private static final int
BLOCK_CALC
0
private static final int
BLOCK_MAGRES
2
private static final int
BLOCK_NEW
-2
private static final int
BLOCK_NONE
-1
-
org.jmol.adapter.readers.xtal.ShelxReader Modifier and Type Constant Field Value private static final java.lang.String
unsupportedRecordTypes
";ZERR;DISP;UNIT;LAUE;REM;MORE;TIME;HKLF;OMIT;SHEL;BASF;TWIN;EXTI;SWAT;HOPE;MERG;SPEC;RESI;MOVE;ANIS;AFIX;HFIX;FRAG;FEND;EXYZ;EXTI;EADP;EQIV;CONN;PART;BIND;FREE;DFIX;DANG;BUMP;SAME;SADI;CHIV;FLAT;DELU;SIMU;DEFS;ISOR;NCSY;SUMP;L.S.;CGLS;BLOC;DAMP;STIR;WGHT;FVAR;BOND;CONF;MPLA;RTAB;HTAB;LIST;ACTA;SIZE;TEMP;WPDB;FMAP;GRID;PLAN;MOLE;"
-
org.jmol.adapter.readers.xtal.SiestaReader Modifier and Type Constant Field Value private static final double
ACF_ANG
1.0
private static final double
ACF_BOHR
0.529177
private static final double
ACF_M
1.0E10
private static final double
ACF_NM
10.0
private final int
STATE_INPUT
1
private final int
STATE_OUTPUT
2
private final int
STATE_UNKNOWN
0
-
org.jmol.adapter.readers.xtal.Wien2kReader Modifier and Type Constant Field Value private final java.lang.String
cxyz
" x y z"
-
org.jmol.adapter.smarter.AtomSetCollection Modifier and Type Constant Field Value public static final int
GLOBAL_CONECT
3
public static final int
GLOBAL_DOMAINS
5
public static final int
GLOBAL_FRACTCOORD
0
public static final int
GLOBAL_ISPDB
4
public static final int
GLOBAL_SYMMETRY
1
public static final int
GLOBAL_UNITCELLS
2
public static final int
GLOBAL_VALIDATIONS
6
-
org.jmol.adapter.smarter.AtomSetCollectionReader Modifier and Type Constant Field Value public static final float
ANGSTROMS_PER_BOHR
0.529177188873291f
-
org.jmol.adapter.smarter.Resolver Modifier and Type Constant Field Value private static final java.lang.String
classBase
"org.jmol.adapter.readers."
private static final java.lang.String
CML_NAMESPACE_URI
"http://www.xml-cml.org/schema"
private static final int
LEADER_CHAR_MAX
64
-
org.jmol.adapter.smarter.SmarterJmolAdapter Modifier and Type Constant Field Value public static final java.lang.String
PATH_KEY
".PATH"
-
org.jmol.adapter.smarter.XtalSymmetry Modifier and Type Constant Field Value private static final int
PARTICLE_CHAIN
1
private static final int
PARTICLE_NONE
0
private static final int
PARTICLE_SYMOP
2
-
org.jmol.api.GenericPlatform Modifier and Type Constant Field Value public static final int
CURSOR_CROSSHAIR
1
public static final int
CURSOR_DEFAULT
0
public static final int
CURSOR_HAND
12
public static final int
CURSOR_MOVE
13
public static final int
CURSOR_WAIT
3
public static final int
CURSOR_ZOOM
8
-
org.jmol.api.JmolAdapter Modifier and Type Constant Field Value public static final int
ORDER_AROMATIC
515
public static final int
ORDER_AROMATIC_DOUBLE
514
public static final int
ORDER_AROMATIC_SINGLE
513
public static final int
ORDER_COVALENT_DOUBLE
2
public static final int
ORDER_COVALENT_HEX
6
public static final int
ORDER_COVALENT_QUAD
4
public static final int
ORDER_COVALENT_QUINT
5
public static final int
ORDER_COVALENT_SINGLE
1
public static final int
ORDER_COVALENT_TRIPLE
3
public static final int
ORDER_HBOND
2048
public static final int
ORDER_PARTIAL01
33
public static final int
ORDER_PARTIAL12
66
public static final int
ORDER_PARTIAL23
97
public static final int
ORDER_PARTIAL32
100
public static final int
ORDER_PYMOL_MULT
98304
public static final int
ORDER_PYMOL_SINGLE
65536
public static final int
ORDER_STEREO_FAR
1041
public static final int
ORDER_STEREO_NEAR
1025
public static final int
ORDER_UNSPECIFIED
17
-
org.jmol.api.JmolDataManager Modifier and Type Constant Field Value public static final int
DATA_LABEL
0
public static final int
DATA_SAVE_IN_STATE
4
public static final int
DATA_SELECTION
2
public static final int
DATA_TYPE
3
public static final int
DATA_TYPE_AF
1
public static final int
DATA_TYPE_AFF
2
public static final int
DATA_TYPE_AFFF
3
public static final int
DATA_TYPE_LAST
-2
public static final int
DATA_TYPE_STRING
0
public static final int
DATA_TYPE_UNKNOWN
-1
public static final int
DATA_VALUE
1
-
org.jmol.api.JmolGestureServerInterface Modifier and Type Constant Field Value public static final int
HAS_CLIENT
2
public static final int
HAS_DRIVER
4
public static final int
OK
1
-
org.jmol.api.JmolScriptManager Modifier and Type Constant Field Value public static final int
FILE_DROPPED
16
public static final int
IS_APPEND
4
public static final int
NO_AUTOPLAY
8
public static final int
NO_SCRIPT
2
public static final int
PDB_CARTOONS
1
-
org.jmol.atomdata.AtomData Modifier and Type Constant Field Value public static final int
MODE_FILL_COORDS
1
public static final int
MODE_FILL_MODEL
0
public static final int
MODE_FILL_MOLECULES
4
public static final int
MODE_FILL_MULTIMODEL
16
public static final int
MODE_FILL_RADII
2
public static final int
MODE_GET_ATTACHED_HYDROGENS
8
-
org.jmol.awtjs.Event Modifier and Type Constant Field Value public static final int
ALT_MASK
8
public static final int
BUTTON_MASK
28
public static final int
CLICKED
2
public static final int
CTRL_ALT
10
public static final int
CTRL_MASK
2
public static final int
CTRL_SHIFT
3
public static final int
DRAGGED
1
public static final int
MAC_COMMAND
20
public static final int
META_MASK
4
public static final int
MOUSE_DOWN
501
public static final int
MOUSE_DRAG
506
public static final int
MOUSE_ENTER
504
public static final int
MOUSE_EXIT
505
public static final int
MOUSE_LEFT
16
public static final int
MOUSE_MIDDLE
8
public static final int
MOUSE_MOVE
503
public static final int
MOUSE_RIGHT
4
public static final int
MOUSE_UP
502
public static final int
MOUSE_WHEEL
32
public static final int
MOVED
0
public static final int
PRESSED
4
public static final int
RELEASED
5
public static final int
SHIFT_MASK
1
public static final int
VK_ALT
18
public static final int
VK_BACK_SPACE
8
public static final int
VK_CONTROL
17
public static final int
VK_DELETE
127
public static final int
VK_DOWN
40
public static final int
VK_ESCAPE
27
public static final int
VK_LEFT
37
public static final int
VK_META
157
public static final int
VK_PAGE_DOWN
34
public static final int
VK_PAGE_UP
33
public static final int
VK_PERIOD
46
public static final int
VK_RIGHT
39
public static final int
VK_SHIFT
16
public static final int
VK_SPACE
32
public static final int
VK_UP
38
public static final int
WHEELED
3
-
org.jmol.awtjs.swing.BorderLayout Modifier and Type Constant Field Value public static final java.lang.String
CENTER
"Center"
public static final java.lang.String
EAST
"East"
public static final java.lang.String
NORTH
"North"
public static final java.lang.String
SOUTH
"South"
public static final java.lang.String
WEST
"West"
-
org.jmol.awtjs.swing.GridBagConstraints Modifier and Type Constant Field Value public static final int
CENTER
10
public static final int
EAST
13
public static final int
NONE
0
public static final int
WEST
17
-
org.jmol.awtjs.swing.JDialog Modifier and Type Constant Field Value private static final int
headerHeight
25
-
org.jmol.awtjs.swing.JMenuItem Modifier and Type Constant Field Value public static final int
TYPE_BUTTON
1
public static final int
TYPE_CHECKBOX
2
public static final int
TYPE_MENU
4
public static final int
TYPE_RADIO
3
public static final int
TYPE_SEPARATOR
0
-
org.jmol.awtjs.swing.JSplitPane Modifier and Type Constant Field Value public static final int
HORIZONTAL_SPLIT
1
-
org.jmol.awtjs.swing.SwingConstants Modifier and Type Constant Field Value public static final int
CENTER
0
public static final int
LEFT
2
public static final int
RIGHT
4
-
org.jmol.bspt.Bspt Modifier and Type Constant Field Value static final int
leafCountMax
2
static final int
MAX_TREE_DEPTH
100
-
org.jmol.c.PAL Modifier and Type Constant Field Value public static final byte
PALETTE_ALTLOC
14
public static final byte
PALETTE_AMINO
8
public static final byte
PALETTE_CHAIN
10
public static final byte
PALETTE_CPK
1
public static final byte
PALETTE_ENERGY
19
public static final byte
PALETTE_FIXEDTEMP
5
public static final byte
PALETTE_FORMAL_CHARGE
3
public static final byte
PALETTE_GROUP
75
public static final byte
PALETTE_INSERTION
15
public static final byte
PALETTE_JMOL
16
public static final byte
PALETTE_MOLECULE
77
public static final byte
PALETTE_MONOMER
76
public static final byte
PALETTE_NONE
0
public static final byte
PALETTE_NUCLEIC
24
public static final byte
PALETTE_PARTIAL_CHARGE
2
public static final byte
PALETTE_POLYMER
87
public static final byte
PALETTE_PROPERTY
84
public static final byte
PALETTE_RASMOL
17
public static final byte
PALETTE_SHAPELY
9
public static final byte
PALETTE_STRAIGHTNESS
86
public static final byte
PALETTE_STRUCTURE
7
public static final byte
PALETTE_SURFACE
70
public static final byte
PALETTE_TEMP
68
public static final byte
PALETTE_TYPE
18
public static final byte
PALETTE_VARIABLE
85
public static final byte
PALETTE_VOLATILE
64
-
org.jmol.dssx.DSSR1 Modifier and Type Constant Field Value private static final java.lang.String
DSSR_PATHS
"..bulges.nts_long..coaxstacks.stems.pairs.nt*..hairpins.nts_long..hbonds.atom1_id;atom2_id..helices.pairs.nt*..iloops.nts_long..isocanonpairs.nt*..junctions.nts_long..kissingloops.hairpins.nts_long..multiplets.nts_long..nonstack.nts_long..nts.nt_id..pairs.nt*..sssegments.nts_long..stacks.nts_long..stems.pairs.nt*.."
-
org.jmol.export.___Exporter Modifier and Type Constant Field Value protected static final float
degreesPerRadian
57.295780181884766f
-
org.jmol.export._ObjExporter Modifier and Type Constant Field Value private static final boolean
debug
false
-
org.jmol.g3d.org.jmol.g3d.LineRenderer Modifier and Type Constant Field Value private static final int
VISIBILITY_CLIPPED
1
private static final int
VISIBILITY_OFFSCREEN
2
private static final int
VISIBILITY_UNCLIPPED
0
-
org.jmol.g3d.SphereRenderer Modifier and Type Constant Field Value private static final int
maxOddSizeSphere
49
static final int
maxSphereDiameter
1000
static final int
maxSphereDiameter2
2000
private static final int
SHADE_SLAB_CLIPPED
47
-
org.jmol.g3d.TriangleRenderer Modifier and Type Constant Field Value private static final int
DEFAULT
64
-
org.jmol.jvxl.calc.MarchingCubes Modifier and Type Constant Field Value protected static final int
MODE_CUBE
1
protected static final int
MODE_JVXL
2
protected static final int
MODE_PLANES
3
-
org.jmol.jvxl.calc.MarchingSquares Modifier and Type Constant Field Value public static final int
CONTOUR_POINT
-1
public static final int
defaultContourCount
9
public static final int
EDGE_POINT
-3
private static final int
nContourMax
100
public static final int
VERTEX_POINT
-2
-
org.jmol.jvxl.data.JvxlCoder Modifier and Type Constant Field Value public static final int
CONTOUR_BITSET
1
public static final int
CONTOUR_COLIX
3
public static final int
CONTOUR_COLOR
4
public static final int
CONTOUR_FDATA
5
public static final int
CONTOUR_NPOLYGONS
0
public static final int
CONTOUR_POINTS
6
public static final int
CONTOUR_VALUE
2
public static final int
defaultColorFractionBase
35
public static final int
defaultColorFractionRange
90
public static final int
defaultEdgeFractionBase
35
public static final int
defaultEdgeFractionRange
90
public static final java.lang.String
JVXL_VERSION_XML
"2.3"
public static final java.lang.String
JVXL_VERSION1
"2.0"
-
org.jmol.jvxl.data.MeshData Modifier and Type Constant Field Value public static final int
MODE_GET_COLOR_INDEXES
2
public static final int
MODE_GET_VERTICES
1
public static final int
MODE_PUT_SETS
3
public static final int
MODE_PUT_VERTICES
4
-
org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoIntersectAtomReader Modifier and Type Constant Field Value private static final int
TYPE_DIFF
2
private static final int
TYPE_DIFF_PAIR
4
private static final int
TYPE_FUNCTION
0
private static final int
TYPE_MAX
3
private static final int
TYPE_SUM
1
-
org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoIntersectReader Modifier and Type Constant Field Value private static final int
TYPE_DIFF
2
private static final int
TYPE_DIFF_PAIR
4
private static final int
TYPE_FUNCTION
0
private static final int
TYPE_MAX
3
private static final int
TYPE_SUM
1
-
org.jmol.jvxl.readers.org.jmol.jvxl.readers.IsoShapeReader Modifier and Type Constant Field Value private static final double
A0
0.52918
private static final float
ATOMIC_ORBITAL_ZERO_CUT_OFF
1.0000000116860974E-7f
private static final double
ROOT2
1.414214
-
org.jmol.jvxl.readers.org.jmol.jvxl.readers.KinemageReader Modifier and Type Constant Field Value private static final int
POINTS_ALL
0
private static final int
POINTS_HETS
4
private static final int
POINTS_MCMC
1
private static final int
POINTS_MCSC
3
private static final int
POINTS_SCSC
2
-
org.jmol.jvxl.readers.Parameters Modifier and Type Constant Field Value static final float
ANGSTROMS_PER_BOHR
0.529177188873291f
static final int
defaultColorFractionBase
35
static final int
defaultColorFractionRange
90
static final int
defaultColorNegative
-65536
static final int
defaultColorNegativeLCAO
-8388480
static final int
defaultColorPositive
-16776961
static final int
defaultColorPositiveLCAO
-23296
static final int
defaultContourCount
11
static final float
defaultCutoff
0.019999999552965164f
static final int
defaultEdgeFractionBase
35
static final int
defaultEdgeFractionRange
90
static final float
defaultLobeCutoff
0.14000000059604645f
static final float
defaultMappedDataMax
1.0f
static final float
defaultMappedDataMin
0.0f
static final float
defaultMepCutoff
0.10000000149011612f
static final float
defaultMepMax
0.10000000149011612f
static final float
defaultMepMin
-0.10000000149011612f
static final float
defaultOrbitalCutoff
0.03999999910593033f
static final float
defaultOrbitalCutoffOld
0.14000000059604645f
static final float
defaultQMElectronDensityCutoff
0.009999999776482582f
public static final float
defaultQMOrbitalCutoff
0.05000000074505806f
static final float
defaultSolventRadius
1.2000000476837158f
static final int
HAS_MAXGRID
256
static final int
IS_POINTMAPPABLE
512
static final int
IS_SILENT
64
static final int
IS_SLABBABLE
1024
public static final int
IS_SOLVENTTYPE
128
public static final int
MEP_MAX_GRID
40
public static final int
MO_MAX_GRID
80
static final int
nContourMax
100
static final int
NO_ANISOTROPY
32
static final int
QM_TYPE_GAUSSIAN
1
static final int
QM_TYPE_NCI_PRO
3
static final int
QM_TYPE_NCI_SCF
4
static final int
QM_TYPE_SLATER
2
static final int
QM_TYPE_UNKNOWN
0
static final int
QM_TYPE_VOLUME_DATA
5
public static final int
STATE_DATA_COLORED
3
public static final int
STATE_DATA_READ
2
public static final int
STATE_INITIALIZED
1
public static final int
STATE_UNINITIALIZED
0
static final int
SURFACE_ATOMICORBITAL
1294
static final int
SURFACE_ELLIPSOID2
66
static final int
SURFACE_ELLIPSOID3
67
static final int
SURFACE_FUNCTIONXY
8
static final int
SURFACE_FUNCTIONXYZ
9
static final int
SURFACE_GEODESIC
74
static final int
SURFACE_INTERSECT_ATOM
1333
static final int
SURFACE_INTERSECT_FILE
1334
static final int
SURFACE_LCAOCARTOON
69
static final int
SURFACE_LOBE
68
public static final int
SURFACE_LONEPAIR
70
static final int
SURFACE_MEP
1328
static final int
SURFACE_MLP
1329
static final int
SURFACE_MOLECULAR
1203
static final int
SURFACE_MOLECULARORBITAL
1837
static final int
SURFACE_NCI
1844
static final int
SURFACE_NOMAP
1207
static final int
SURFACE_NONE
0
static final int
SURFACE_PROPERTY
1208
public static final int
SURFACE_RADICAL
71
static final int
SURFACE_SASURFACE
1196
static final int
SURFACE_SOLVENT
1195
static final int
SURFACE_SPHERE
65
-
org.jmol.jvxl.readers.org.jmol.jvxl.readers.PyMOLMeshReader Modifier and Type Constant Field Value static final int
cMapSourceBRIX
6
static final int
cMapSourceCCP4
2
static final int
cMapSourceChempyBrick
8
static final int
cMapSourceCrystallographic
1
static final int
cMapSourceDesc
4
static final int
cMapSourceFLD
5
static final int
cMapSourceGeneralPurpose
3
static final int
cMapSourceGRD
7
static final int
cMapSourceObsolete
10
static final int
cMapSourceVMDPlugin
9
static final int
OBJECT_MAPDATA
2
static final int
OBJECT_MAPMESH
3
-
org.jmol.jvxl.readers.SurfaceReader Modifier and Type Constant Field Value static final float
ANGSTROMS_PER_BOHR
0.529177188873291f
static final float
defaultCutoff
0.019999999552965164f
static final float
defaultMappedDataMax
1.0f
static final float
defaultMappedDataMin
0.0f
-
org.jmol.minimize.MMConstraint Modifier and Type Constant Field Value public static final int
TYPE_ANGLE
1
public static final int
TYPE_DIHEDRAL
2
public static final int
TYPE_DISTANCE
0
-
org.jmol.minimize.Util Modifier and Type Constant Field Value public static final double
DEG_TO_RAD
0.017453292519943295
static final double
max_squarable_double
1.0E150
static final double
min_squarable_double
1.0E-150
public static final double
RAD_TO_DEG
57.29577951308232
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.Calculations Modifier and Type Constant Field Value static final int
CALC_ANGLE
1
static final int
CALC_DISTANCE
0
static final int
CALC_ES
6
static final int
CALC_MAX
7
static final int
CALC_OOP
4
static final int
CALC_STRETCH_BEND
3
static final int
CALC_TORSION
2
static final int
CALC_VDW
5
public static final double
DEG_TO_RAD
0.017453292519943295
static final double
KCAL_TO_KJ
4.1868
private static final double
PI_OVER_2
1.5707963267948966
public static final double
RAD_TO_DEG
57.29577951308232
private static final double
TWO_PI
6.283185307179586
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsMMFF Modifier and Type Constant Field Value public static final int
DA_D
68
public static final int
DA_DA
133
static final double
FPAR
143.9325
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsUFF Modifier and Type Constant Field Value static final double
KCAL22
92.1096
static final double
KCAL332
1390.2842991599998
static final double
KCAL44
184.2192
static final double
KCAL6
25.1208
static final double
KCAL644
2696.8016159999997
static final int
PAR_D
3
static final int
PAR_HARD
9
static final int
PAR_R
0
static final int
PAR_RADIUS
10
static final int
PAR_THETA
1
static final int
PAR_U
7
static final int
PAR_V
6
static final int
PAR_X
2
static final int
PAR_XI
8
static final int
PAR_Z
5
static final int
PAR_ZETA
4
-
org.jmol.minimize.forcefield.ForceField Modifier and Type Constant Field Value public static final int
ABI_IJ
3
public static final int
ABI_JK
4
static final int
EANGLE
4
static final int
EBOND
2
static final int
EELECTROSTATIC
128
static final int
ENERGY
1
static final int
EOOP
32
static final int
ESTRBND
8
static final int
ETORSION
16
static final int
EVDW
64
public static final int
R3
0
public static final int
R4
1
public static final int
R5
2
public static final int
Raromatic
3
public static final int
TBI_AB
4
public static final int
TBI_BC
5
public static final int
TBI_CD
6
-
org.jmol.minimize.forcefield.ForceFieldMMFF Modifier and Type Constant Field Value private static final int
A4_BNDK
123
private static final int
A4_CHRG
124
private static final int
A4_SB
125
private static final int
A4_SBDEF
126
private static final int
A4_VDW
122
private static final int
KEY_BNDK
0
private static final int
KEY_OOP
6
private static final int
KEY_PBCI
0
private static final int
KEY_SBDEF
0
private static final int
KEY_VDW
0
private static final java.lang.String
names
"END.BCI.CHG.ANG.NDK.OND.OOP.TBN.FSB.TOR.VDW."
private static final int
TYPE_ANGLE
5
private static final int
TYPE_BNDK
546
private static final int
TYPE_BOND
3
private static final int
TYPE_CHRG
34
private static final int
TYPE_OOP
13
private static final int
TYPE_PBCI
1
private static final int
TYPE_SB
21
private static final int
TYPE_SBDEF
37
private static final int
TYPE_TORSION
9
private static final int
TYPE_VDW
17
-
org.jmol.minimize.forcefield.ForceFieldUFF Modifier and Type Constant Field Value private static final int
PT_CHARGE
5
private static final int
PT_CONNECT
6
private static final int
PT_ELEMENT
2
private static final int
TOKEN_AROMATIC
3
private static final int
TOKEN_ELEMENT_ALLYLIC
6
private static final int
TOKEN_ELEMENT_CHARGED
1
private static final int
TOKEN_ELEMENT_CONNECTED
2
private static final int
TOKEN_ELEMENT_ONLY
0
private static final int
TOKEN_ELEMENT_SP
4
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFAngleCalc Modifier and Type Constant Field Value static final double
CB
-0.006981317007977318
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFDistanceCalc Modifier and Type Constant Field Value static final double
CS
-2.0
static final double
CS2
2.3333333333333335
static final double
FSTRETCH
71.96625
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFESCalc Modifier and Type Constant Field Value private static final double
BUFF
0.05
-
org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFOOPCalc Modifier and Type Constant Field Value static final double
FOOP
71.96568080495746
static final double
FOOPD
2.5120761569715815
-
org.jmol.modelkit.Constraint Modifier and Type Constant Field Value public static final int
TYPE_ANGLE
2
public static final int
TYPE_DIHEDRAL
3
public static final int
TYPE_DISTANCE
1
public static final int
TYPE_SYMMETRY
0
-
org.jmol.modelkit.ModelKitPopup Modifier and Type Constant Field Value static final java.lang.String
ATOM_MENU
"atomMenu"
static final java.lang.String
BOND_MENU
"bondMenu"
public static final java.lang.String
BOOLEAN_OPTIONS
";showsymopinfo;clicktosetelement;addhydrogen;addhydrogens;"
private static final int
MAX_LABEL
32
public static final java.lang.String
MODE_OPTIONS
";view;edit;molecular;"
public static final java.lang.String
SET_OPTIONS
";element;"
public static final int
STATE_BITS_SYM_EDIT
224
public static final int
STATE_BITS_SYM_VIEW
28
public static final int
STATE_BITS_UNITCELL
1792
public static final int
STATE_BITS_XTAL
3
public static final int
STATE_MOLECULAR
0
public static final int
STATE_SYM_APPLYFULL
128
public static final int
STATE_SYM_APPLYLOCAL
32
public static final int
STATE_SYM_NONE
0
public static final int
STATE_SYM_RETAINLOCAL
64
public static final int
STATE_SYM_SHOW
8
public static final int
STATE_UNITCELL_EXTEND
256
public static final int
STATE_UNITCELL_PACKED
0
public static final int
STATE_XTALEDIT
2
public static final int
STATE_XTALVIEW
1
public static final java.lang.String
SYMMETRY_OPTIONS
";none;applylocal;retainlocal;applyfull;"
public static final java.lang.String
UNITCELL_OPTIONS
";packed;extend;"
static final java.lang.String
XTAL_MENU
"xtalMenu"
-
org.jmol.modelkit.ModelKitPopupResourceBundle Modifier and Type Constant Field Value private static final java.lang.String
MENU_NAME
"modelkitMenu"
-
org.jmol.modelset.Atom Modifier and Type Constant Field Value public static final int
ATOM_INFRAME
1
public static final int
ATOM_INFRAME_NOTHIDDEN
9
public static final int
ATOM_NOFLAGS
-64
public static final int
ATOM_NOTHIDDEN
8
public static final int
ATOM_SHAPE_VIS_MASK
-10
public static final int
ATOM_VISIBLE
4
public static final int
ATOM_VISSET
2
private static final int
CHARGE_OFFSET
24
private static final int
CIP_CHIRALITY_MASK
496
private static final int
CIP_CHIRALITY_OFFSET
4
private static final int
CIP_CHIRALITY_RULE_MASK
3584
private static final int
CIP_CHIRALITY_RULE_OFFSET
9
private static final int
CIP_MASK
4080
private static final int
FLAG_MASK
15
private static final int
IS_HETERO_FLAG
2
public static final float
RADIUS_GLOBAL
16.100000381469727f
public static final int
RADIUS_MAX
16
private static final int
VIBRATION_VECTOR_FLAG
1
-
org.jmol.modelset.AtomCollection Modifier and Type Constant Field Value private static final float
almost180
2.9845130443573f
public static final int
CALC_H_DOALL
256
public static final int
CALC_H_HAVEH
1024
public static final int
CALC_H_IGNORE_H
2048
public static final int
CALC_H_JUSTC
512
public static final int
CALC_H_QUICK
4
public static final int
TAINT_ATOMNAME
0
public static final int
TAINT_ATOMNO
13
public static final int
TAINT_ATOMTYPE
1
public static final int
TAINT_BONDINGRADIUS
6
public static final int
TAINT_CHAIN
16
public static final int
TAINT_COORD
2
public static final int
TAINT_ELEMENT
3
public static final int
TAINT_FORMALCHARGE
4
public static final int
TAINT_HYDROPHOBICITY
5
public static final int
TAINT_MAX
17
public static final int
TAINT_OCCUPANCY
7
public static final int
TAINT_PARTIALCHARGE
8
public static final int
TAINT_RESNO
15
public static final int
TAINT_SEQID
14
public static final int
TAINT_TEMPERATURE
9
public static final int
TAINT_VALENCE
10
public static final int
TAINT_VANDERWAALS
11
public static final int
TAINT_VIBRATION
12
-
org.jmol.modelset.BondCollection Modifier and Type Constant Field Value protected static final int
BOND_GROWTH_INCREMENT
250
protected static final int
MAX_BONDS_LENGTH_TO_CACHE
5
protected static final int
MAX_NUM_TO_CACHE
200
-
org.jmol.modelset.Group Modifier and Type Constant Field Value private static final int
INSERTION_CODE_MASK
127
private static final int
SEQUENCE_NUMBER_FLAG
128
private static final int
SEQUENCE_NUMBER_SHIFT
8
-
org.jmol.modelset.HBond Modifier and Type Constant Field Value private static final double
QConst
-27888.0
-
org.jmol.modelset.LabelToken Modifier and Type Constant Field Value private static final java.lang.String
labelTokenParams
"AaBbCcDEefGgIiLlMmNnOoPpQqRrSsTtUuVvWXxxYyyZzz%%%gqW"
public static final java.lang.String
STANDARD_LABEL
"%[identify]"
private static final java.lang.String
twoCharLabelTokenParams
"fuv"
-
org.jmol.modelset.Measurement Modifier and Type Constant Field Value public static final int
NMR_DC
1
public static final int
NMR_JC
2
public static final int
NMR_NOE_OR_J
3
public static final int
NMR_NOT
0
-
org.jmol.modelset.ModelLoader Modifier and Type Constant Field Value private static final int
defaultGroupCount
32
-
org.jmol.modelsetbio.AminoMonomer Modifier and Type Constant Field Value private static final float
beta
0.296705961227417f
private static final byte
C
3
private static final byte
CA
0
private static final byte
N
2
private static final byte
O
1
private static final byte
OT
4
-
org.jmol.modelsetbio.AminoPolymer Modifier and Type Constant Field Value private static final float
maxHbondAlphaDistance
9.0f
private static final float
maxHbondAlphaDistance2
81.0f
private static final float
minimumHbondDistance2
0.25f
-
org.jmol.modelsetbio.BioExt Modifier and Type Constant Field Value private static final java.lang.String
aaPlus
"LYSN"
private static final java.lang.String
aaSp2
"ARGN;ASNN;ASNO;ASPO;GLNN;GLNO;GLUO;HISN;HISC;PHECTRPC;TRPN;TYRC"
private static final java.lang.String
aaSp21
"ARGNE;ARGNH1;ASNNH2;GLNNE2;TRPNE1;HISNE2"
private static final java.lang.String
naNoH
"A3;A1;C3;G3;I3"
-
org.jmol.modelsetbio.BioPolymer Modifier and Type Constant Field Value protected static final int
TYPE_AMINO
1
protected static final int
TYPE_CARBOHYDRATE
3
protected static final int
TYPE_NOBONDING
0
protected static final int
TYPE_NUCLEIC
2
-
org.jmol.modelsetbio.BioResolver Modifier and Type Constant Field Value private static final java.lang.String
allCarbohydrates
",[AHR],[ALL],[AMU],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC],[GXL],[GUP],[LXC],[MAN],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[GCU],[MTL],[NAG],[NDG],[RHA],[SOR],[SOL],[SOE],[XYL],[A2G],[LBT],[NGA],[SIA],[SLB],[AFL],[AGC],[GLB],[NAN],[RAA]"
-
org.jmol.modelsetbio.NucleicMonomer Modifier and Type Constant Field Value private static final byte
C1P
25
private static final byte
C2
5
private static final byte
C2P
26
private static final byte
C3P
22
private static final byte
C4
7
private static final byte
C4P
27
private static final byte
C5
3
private static final byte
C5P
29
static final byte
C6
1
private static final byte
C8
10
private static final byte
H3T
20
private static final byte
H5T
18
private static final byte
N1
4
private static final byte
N2
17
private static final byte
N3
6
private static final byte
N4
14
private static final byte
N6
16
private static final byte
N7
9
private static final byte
N9
11
private static final byte
NP
15
private static final byte
O1P
23
private static final byte
O2
8
private static final byte
O2P
24
private static final byte
O2Pr
2
private static final byte
O3P
21
private static final byte
O4
12
private static final byte
O4P
28
private static final byte
O5P
19
private static final byte
O6
13
-
org.jmol.modelsetbio.PhosphorusMonomer Modifier and Type Constant Field Value protected static final byte
P
0
-
org.jmol.multitouch.ActionManagerMT Modifier and Type Constant Field Value public static final int
BIRTH
0
public static final int
CLICK
3
public static final int
CLICK_EVENT
8
public static final int
DBLCLK_EVENT
5
public static final int
DBLCLK_GESTURE
6
public static final int
DEATH
1
public static final int
DRAG_EVENT
0
public static final int
DRAG_GESTURE
0
public static final int
DRIVER_NONE
-2
public static final int
FLICK_EVENT
6
public static final int
FLICK_GESTURE
7
public static final int
INVALID_GESTURE
9
public static final int
MOVE
2
public static final int
MULTI_POINT_DRAG_GESTURE
1
public static final int
RELATIVE_DRAG_EVENT
7
public static final int
RELATIVE_DRAG_GESTURE
8
public static final int
ROTATE_EVENT
1
public static final int
ROTATE_GESTURE
2
public static final int
SERVICE_LOST
-1
public static final int
SPIN_EVENT
2
public static final int
SPIN_GESTURE
3
public static final int
TOUCH_EVENT
3
public static final int
TOUCH_GESTURE
4
public static final int
ZOOM_EVENT
4
public static final int
ZOOM_GESTURE
5
-
org.jmol.multitouch.sparshui.SinglePointGesture Modifier and Type Constant Field Value private static final long
MAXIMUM_CLICK_TIME
200L
-
org.jmol.popup.JmolPopup Modifier and Type Constant Field Value private static final int
itemMax
25
private static final int
MENUITEM_HEIGHT
20
protected static final int
UPDATE_ALL
0
protected static final int
UPDATE_CONFIG
1
protected static final int
UPDATE_NEVER
-1
protected static final int
UPDATE_SHOW
2
-
org.jmol.popup.MainPopupResourceBundle Modifier and Type Constant Field Value private static final java.lang.String
MENU_NAME
"popupMenu"
-
org.jmol.quantum.MepCalculation Modifier and Type Constant Field Value protected static final int
E_MINUS_D
3
protected static final int
E_MINUS_D_OVER_2
1
protected static final int
ONE_OVER_D
0
protected static final int
ONE_OVER_ONE_PLUS_D
2
-
org.jmol.quantum.MOCalculation Modifier and Type Constant Field Value private static final double
CUT
-50.0
public static final int
NORM_NBO
3
public static final int
NORM_NONE
0
public static final int
NORM_NWCHEM
2
public static final int
NORM_STANDARD
1
public static final double
ROOT3
1.7320507764816284
-
org.jmol.quantum.NciCalculation Modifier and Type Constant Field Value private static final double
NO_VALUE
100.0
private static final int
TYPE_ALL
0
private static final int
TYPE_INTER
2
private static final int
TYPE_INTRA
1
private static final int
TYPE_LIGAND
3
-
org.jmol.quantum.NMRCalculation Modifier and Type Constant Field Value private static final double
DIPOLAR_FACTOR
1054.5717253362893
private static final double
e_charge
1.60217646E-19
private static final double
h_bar_planck
1.0545717253362894E-34
private static final double
h_planck
6.62606957E-34
private static final double
J_FACTOR
0.0167840302932219
public static final java.lang.String
JCH3_AYDIN_GUETHER
"ayd"
public static final java.lang.String
JCH3_NONE
"none"
public static final java.lang.String
JCH3_TVAROSKA_TARAVEL
"tva"
public static final java.lang.String
JCH3_WASYLISHEN_SCHAEFER
"was"
private static final int
MAGNETOGYRIC_RATIO
1
public static final int
MODE_CALC_2JHH
1
public static final int
MODE_CALC_3JCH
4
public static final int
MODE_CALC_3JHH
2
public static final int
MODE_CALC_ALL
15
public static final int
MODE_CALC_INVALID
0
public static final int
MODE_CALC_J
7
public static final int
MODE_CALC_JHH
3
public static final int
MODE_CALC_NOE
8
private static final double
Q_FACTOR
2.349647144641375E8
private static final int
QUADRUPOLE_MOMENT
2
private static final java.lang.String
resource
"nmr_data.txt"
-
org.jmol.quantum.QS Modifier and Type Constant Field Value public static final java.lang.String
CANONICAL_DC_LIST
"DXX DYY DZZ DXY DXZ DYZ"
public static final java.lang.String
CANONICAL_DS_LIST
"d0 d1+ d1- d2+ d2-"
public static final java.lang.String
CANONICAL_FC_LIST
"XXX YYY ZZZ XYY XXY XXZ XZZ YZZ YYZ XYZ"
public static final java.lang.String
CANONICAL_FS_LIST
"f0 f1+ f1- f2+ f2- f3+ f3-"
public static final int
DC
4
public static final int
DS
3
public static final int
FC
6
public static final int
FS
5
public static final int
GC
8
public static final int
GS
7
public static final int
HC
10
public static final int
HS
9
public static final int
IC
12
public static final int
IS
11
private static final int
MAXID
13
public static final int
P
1
public static final int
S
0
public static final int
SP
2
-
org.jmol.quantum.QuantumCalculation Modifier and Type Constant Field Value protected static final float
bohr_per_angstrom
1.8897161483764648f
-
org.jmol.quantum.mo.DataAdder7F Modifier and Type Constant Field Value static final double
c0_xxz_yyz
0.6708203932499369
static final double
c1n_xxy
0.27386127875258304
static final double
c1n_yyy
0.6123724356957945
static final double
c1n_yzz
1.0954451150103321
static final double
c1p_xxx
0.6123724356957945
static final double
c1p_xyy
0.27386127875258304
static final double
c1p_xzz
1.0954451150103321
static final double
c2p_xxz_yyz
0.8660254037844386
static final double
c3n_xxy
1.0606601717798214
static final double
c3n_yyy
0.7905694150420949
static final double
c3p_xxx
0.7905694150420949
static final double
c3p_xyy
1.0606601717798214
-
org.jmol.renderbio.BioMeshRenderer Modifier and Type Constant Field Value private static final int
ABSOLUTE_MIN_MESH_SIZE
3
private static final int
MIN_MESH_RENDER_SIZE
8
private static final int
MODE_ELLIPTICAL
2
private static final int
MODE_FLAT
1
private static final int
MODE_NONELLIPTICAL
3
private static final int
MODE_TUBE
0
-
org.jmol.renderspecial.DipolesRenderer Modifier and Type Constant Field Value private static final int
arrowHeadBase
4
private static final float
arrowHeadOffset
0.8999999761581421f
private static final int
arrowHeadTip
5
private static final float
arrowHeadWidthFactor
2.0f
private static final int
center
3
private static final int
cross
1
private static final int
crossEnd
2
private static final float
crossOffset
0.10000000149011612f
private static final float
crossWidth
0.03999999910593033f
private static final int
cylinderBase
0
-
org.jmol.renderspecial.EllipsoidsRenderer Modifier and Type Constant Field Value private static final int
OPT_ARCS
1
private static final int
OPT_ARROWS
5
private static final int
OPT_AXES
2
private static final int
OPT_BALL
4
private static final int
OPT_COUNT
7
private static final int
OPT_DOTS
0
private static final int
OPT_FILL
3
private static final int
OPT_WIREFRAME
6
private static final float
toRadians
0.01745329238474369f
-
org.jmol.renderspecial.VectorsRenderer Modifier and Type Constant Field Value private static final float
arrowHeadOffset
-0.20000000298023224f
-
org.jmol.script.CommandWatcherThread Modifier and Type Constant Field Value private static final int
commandDelay
50
-
org.jmol.script.ScriptCompiler Modifier and Type Constant Field Value private static final int
CONTINUE
2
private static final int
EOL
3
private static final int
ERROR
4
private static final int
OK
0
private static final int
OK2
1
private static final int
RESTART
5
-
org.jmol.script.org.jmol.script.ScriptDelayThread Modifier and Type Constant Field Value public static final int
PAUSE_DELAY
-100
-
org.jmol.script.ScriptError Modifier and Type Constant Field Value static final int
ERROR_axisExpected
0
static final int
ERROR_backgroundModelError
1
public static final int
ERROR_badArgumentCount
2
static final int
ERROR_badMillerIndices
3
public static final int
ERROR_badRGBColor
4
static final int
ERROR_booleanExpected
5
static final int
ERROR_booleanOrNumberExpected
6
static final int
ERROR_booleanOrWhateverExpected
7
public static final int
ERROR_cannotSet
56
static final int
ERROR_colorExpected
8
static final int
ERROR_colorOrPaletteRequired
9
static final int
ERROR_commandExpected
10
static final int
ERROR_coordinateOrNameOrExpressionRequired
11
static final int
ERROR_drawObjectNotDefined
12
public static final int
ERROR_endOfStatementUnexpected
13
public static final int
ERROR_expressionExpected
14
public static final int
ERROR_expressionOrIntegerExpected
15
static final int
ERROR_filenameExpected
16
public static final int
ERROR_fileNotFoundException
17
public static final int
ERROR_incompatibleArguments
18
public static final int
ERROR_insufficientArguments
19
static final int
ERROR_integerExpected
20
static final int
ERROR_integerOutOfRange
21
public static final int
ERROR_invalidArgument
22
public static final int
ERROR_invalidParameterOrder
23
public static final int
ERROR_keywordExpected
24
public static final int
ERROR_moCoefficients
25
public static final int
ERROR_moIndex
26
public static final int
ERROR_moModelError
27
public static final int
ERROR_moOccupancy
28
public static final int
ERROR_moOnlyOne
29
public static final int
ERROR_multipleModelsDisplayedNotOK
30
static final int
ERROR_multipleModelsNotOK
55
public static final int
ERROR_noData
31
public static final int
ERROR_noPartialCharges
32
static final int
ERROR_noUnitCell
33
public static final int
ERROR_numberExpected
34
static final int
ERROR_numberMustBe
35
static final int
ERROR_numberOutOfRange
36
static final int
ERROR_objectNameExpected
37
static final int
ERROR_planeExpected
38
static final int
ERROR_propertyNameExpected
39
static final int
ERROR_spaceGroupNotFound
40
static final int
ERROR_stringExpected
41
static final int
ERROR_stringOrIdentifierExpected
42
static final int
ERROR_tooManyPoints
43
static final int
ERROR_tooManyScriptLevels
44
static final int
ERROR_unrecognizedAtomProperty
45
static final int
ERROR_unrecognizedBondProperty
46
static final int
ERROR_unrecognizedCommand
47
static final int
ERROR_unrecognizedExpression
48
static final int
ERROR_unrecognizedObject
49
static final int
ERROR_unrecognizedParameter
50
static final int
ERROR_unrecognizedParameterWarning
51
static final int
ERROR_unrecognizedShowParameter
52
public static final int
ERROR_what
53
public static final int
ERROR_writeWhat
54
-
org.jmol.script.ScriptEval Modifier and Type Constant Field Value public static final java.lang.String
CONTEXT_DELAY
"delay"
public static final java.lang.String
CONTEXT_HOLD_QUEUE
"getEvalContextAndHoldQueue"
private static final long
DELAY_INTERRUPT_MS
1000000L
private static final int
EXEC_ASYNC
-1
private static final int
EXEC_ERR
1
private static final int
EXEC_OK
0
private static final java.lang.String
saveList
"bonds? context? coordinates? orientation? rotation? selection? state? structure?"
-
org.jmol.script.ScriptMathProcessor Modifier and Type Constant Field Value private static final java.lang.String
qMods
" w:0 x:1 y:2 z:3 normal:4 eulerzxz:5 eulerzyz:6 vector:-1 theta:-2 axisx:-3 axisy:-4 axisz:-5 axisangle:-6 matrix:-9"
-
org.jmol.script.org.jmol.script.ScriptTokenParser Modifier and Type Constant Field Value protected static final int
ERROR_badArgumentCount
0
protected static final int
ERROR_badContext
1
protected static final int
ERROR_commandExpected
2
private static final int
ERROR_coordinateExpected
3
protected static final int
ERROR_endOfCommandUnexpected
4
private static final int
ERROR_endOfExpressionExpected
5
private static final int
ERROR_identifierOrResidueSpecificationExpected
6
private static final int
ERROR_invalidAtomSpecification
7
private static final int
ERROR_invalidChainSpecification
8
protected static final int
ERROR_invalidExpressionToken
9
private static final int
ERROR_invalidModelSpecification
10
protected static final int
ERROR_missingEnd
11
private static final int
ERROR_numberExpected
12
private static final int
ERROR_numberOrVariableNameExpected
13
private static final int
ERROR_residueSpecificationExpected
14
protected static final int
ERROR_tokenExpected
15
protected static final int
ERROR_tokenUnexpected
16
private static final int
ERROR_unrecognizedExpressionToken
17
protected static final int
ERROR_unrecognizedParameter
18
protected static final int
ERROR_unrecognizedToken
19
-
org.jmol.script.T Modifier and Type Constant Field Value public static final int
__
1275068449
public static final int
abs
134218250
public static final int
absolute
1073741826
public static final int
acos
134218242
public static final int
add
1275069441
public static final int
addhydrogens
1073741828
public static final int
adjust
1073741830
public static final int
adpmax
1111490561
public static final int
adpmin
1111490562
public static final int
align
1073741832
public static final int
all
1073742327
public static final int
allconnected
1073741834
public static final int
allfloat
256
public static final int
allowaudio
603979797
public static final int
allowembeddedscripts
603979778
public static final int
allowgestures
603979780
public static final int
allowkeystrokes
603979781
public static final int
allowmodelkit
603979782
public static final int
allowmoveatoms
603979783
public static final int
allowmultitouch
603979784
public static final int
allowrotateselected
603979785
public static final int
altloc
1086324739
public static final int
ambientocclusion
553648129
public static final int
ambientpercent
553648130
public static final int
amino
2097154
public static final int
andequals
268435666
public static final int
angle
134217729
public static final int
angstroms
1073741836
public static final int
animation
4097
public static final int
animationfps
553648132
public static final int
animationmode
545259521
public static final int
anisotropy
1073741837
public static final int
antialiasdisplay
603979786
public static final int
antialiasimages
603979788
public static final int
antialiastranslucent
603979790
public static final int
append
1073741839
public static final int
appendnew
603979792
public static final int
appletproxy
545259522
public static final int
applysymmetrytobonds
603979794
public static final int
arc
1073741840
public static final int
area
1073741842
public static final int
aromatic
1075838996
public static final int
array
1275068418
public static final int
arrow
1073741846
public static final int
as
1073741848
public static final int
assign
4098
public static final int
async
1073741849
public static final int
atomExpressionCommand
12288
public static final int
atomicorbital
1073741850
public static final int
atomid
1094713346
public static final int
atomindex
1094713347
public static final int
atomname
1086326786
public static final int
atomno
1094715393
public static final int
atompicking
603979796
public static final int
atomproperty
1077936128
public static final int
atoms
1140850689
public static final int
atomtype
1086326785
public static final int
atomtypes
545259524
public static final int
atomx
1111492609
public static final int
atomy
1111492610
public static final int
atomz
1111492611
public static final int
audio
1073741851
public static final int
auto
1073741852
public static final int
autobond
603979798
public static final int
autofps
603979800
public static final int
autoplaymovie
603979802
public static final int
average
96
public static final int
axes
1611272194
public static final int
axescolor
545259526
public static final int
axesmode
553648134
public static final int
axesmolecular
603979804
public static final int
axesoffset
570425345
public static final int
axesorientationrasmol
603979806
public static final int
axesscale
570425346
public static final int
axesunitcell
603979808
public static final int
axeswindow
603979809
public static final int
axis
1073741854
public static final int
axis1color
545259528
public static final int
axis2color
545259530
public static final int
axis3color
545259532
public static final int
axisangle
134217731
public static final int
babel
1073741856
public static final int
babel21
1073741857
public static final int
back
1073741858
public static final int
backbone
1114249217
public static final int
background
1610616835
public static final int
backgroundcolor
545259534
public static final int
backgroundmodel
536870914
public static final int
backlit
1073741861
public static final int
backshell
1073741862
public static final int
balls
1073741859
public static final int
barb
1073741860
public static final int
barray
15
public static final int
basemodel
2097200
public static final int
basepair
1073741863
public static final int
best
1073741864
public static final int
beta
1073741865
public static final int
bin
1275068420
public static final int
binary
1073741866
public static final int
bind
4100
public static final int
bitset
10
public static final int
blockdata
1073741868
public static final int
bondcount
1228931587
public static final int
bonded
2097155
public static final int
bondingradius
1111492618
public static final int
bondingversion
553648138
public static final int
bondmode
1610612737
public static final int
bondmodeor
603979812
public static final int
bondorder
4101
public static final int
bondpicking
603979814
public static final int
bondradiusmilliangstroms
553648136
public static final int
bonds
1677721602
public static final int
bondset
1073741870
public static final int
bondtolerance
570425348
public static final int
booleanparam
603979776
public static final int
bottom
1073741871
public static final int
boundbox
1678381065
public static final int
boundboxcolor
545259536
public static final int
branch
1073742328
public static final int
breakcmd
102407
public static final int
brillouin
1073741872
public static final int
cache
134221829
public static final int
calculate
4102
public static final int
cameradepth
570425350
public static final int
cancel
1073741874
public static final int
cap
1073741875
public static final int
capture
4103
public static final int
carbohydrate
2097188
public static final int
cartoon
1112152066
public static final int
cartoonbaseedges
603979815
public static final int
cartoonblockheight
570425347
public static final int
cartoonblocks
603979810
public static final int
cartoonladders
603979817
public static final int
cartoonribose
603979818
public static final int
cartoonrockets
603979819
public static final int
cartoonsfancy
603979816
public static final int
cartoonsteps
603979811
public static final int
casecmd
102411
public static final int
catchcmd
102412
public static final int
cavity
1073741876
public static final int
cd
20488
public static final int
cell
1094713349
public static final int
celshading
603979820
public static final int
celshadingpower
553648137
public static final int
center
12289
public static final int
centerat
4105
public static final int
centroid
1094713350
public static final int
cgo
135174
public static final int
chain
1086326788
public static final int
chaincasesensitive
603979822
public static final int
chainno
1094713351
public static final int
check
1073741877
public static final int
checkcir
603979821
public static final int
chemical
1073741879
public static final int
chemicalshift
1111490563
public static final int
chirality
1086324752
public static final int
ciprule
1086324753
public static final int
ciprule6full
603979823
public static final int
circle
1073741880
public static final int
clash
1073741881
public static final int
clear
1073741882
public static final int
clickable
2097190
public static final int
clipboard
1073741884
public static final int
col
1275068934
public static final int
collapsed
1073741886
public static final int
colon
268435490
public static final int
color
1765808134
public static final int
colorrasmol
603979824
public static final int
colorscheme
1073741888
public static final int
comma
268435504
public static final int
command
1073741890
public static final int
commands
1073741892
public static final int
comparator
268435712
public static final int
compare
134221831
public static final int
configuration
1094717448
public static final int
connect
4106
public static final int
connected
134217736
public static final int
console
528395
public static final int
constraint
1073741894
public static final int
contact
134353926
public static final int
context
14
public static final int
contextdepthmax
553648167
public static final int
continuecmd
102408
public static final int
contour
1073741896
public static final int
contourlines
1073741898
public static final int
contours
1073741900
public static final int
coord
1073742329
public static final int
corners
1073741902
public static final int
cos
134218245
public static final int
count
1275068425
public static final int
covalentradius
1111490564
public static final int
create
1073741904
public static final int
criterion
1073741905
public static final int
cross
1275069442
public static final int
crossed
1073741906
public static final int
currentlocalpath
545259538
public static final int
curve
1073741908
public static final int
cutoff
1073741910
public static final int
cylinder
1073741912
public static final int
data
134221834
public static final int
dataseparator
545259540
public static final int
debug
536870916
public static final int
debughigh
536870917
public static final int
debugscript
603979825
public static final int
decimal
3
public static final int
defaultanglelabel
545259542
public static final int
defaultcmd
102413
public static final int
defaultcolorscheme
545259545
public static final int
defaultdirectory
545259546
public static final int
defaultdistancelabel
545259547
public static final int
defaultdrawarrowscale
570425352
public static final int
defaultdropscript
545259548
public static final int
defaultlabelpdb
545259543
public static final int
defaultlabelxyz
545259544
public static final int
defaultlattice
536870918
public static final int
defaultloadfilter
545259549
public static final int
defaultloadscript
545259550
public static final int
defaultON
524288
public static final int
defaults
545259552
public static final int
defaultstructuredssp
603979826
public static final int
defaulttorsionlabel
545259554
public static final int
defaulttranslucent
570425353
public static final int
defaultvdw
545259555
public static final int
define
12290
public static final int
delay
528397
public static final int
delaymaximumms
553648139
public static final int
delete
12291
public static final int
density
1073741914
public static final int
deprecatedparam
1610612736
public static final int
depth
554176526
public static final int
diameter
1073741917
public static final int
diffusepercent
553648140
public static final int
dipole
135175
public static final int
dipolescale
570425354
public static final int
direction
1073741918
public static final int
disablepopupmenu
603979827
public static final int
discrete
1073741920
public static final int
displacement
1073741922
public static final int
display
1610625028
public static final int
displaycellparameters
603979828
public static final int
displayed
2097192
public static final int
distance
1275069443
public static final int
distancefactor
1073741924
public static final int
div
1275068928
public static final int
divide
268435632
public static final int
dna
2097156
public static final int
dollarsign
1073742330
public static final int
domains
1073741925
public static final int
dot
1275069444
public static final int
dotdensity
553648141
public static final int
dots
1112150019
public static final int
dotscale
553648142
public static final int
dotsselectedonly
603979829
public static final int
dotsurface
603979830
public static final int
dotted
1073741926
public static final int
downsample
1073741928
public static final int
dragselected
603979831
public static final int
draw
135176
public static final int
drawfontsize
570425355
public static final int
drawhover
603979832
public static final int
drawing
1073741929
public static final int
drawpicking
603979833
public static final int
dssp
1073741915
public static final int
dsspcalchydrogen
603979834
public static final int
dssr
1111490587
public static final int
dynamicmeasurements
603979835
public static final int
eccentricity
1073741931
public static final int
echo
537022465
public static final int
ed
1073741932
public static final int
edges
1073741933
public static final int
edgesonly
1073741934
public static final int
eds
545259556
public static final int
edsdiff
545259557
public static final int
element
1086326789
public static final int
elemisono
1094713353
public static final int
elemno
1094715402
public static final int
ellipsoid
1112150020
public static final int
ellipsoidarcs
603979836
public static final int
ellipsoidarrows
603979837
public static final int
ellipsoidaxes
603979838
public static final int
ellipsoidaxisdiameter
570425356
public static final int
ellipsoidball
603979839
public static final int
ellipsoiddotcount
553648143
public static final int
ellipsoiddots
603979840
public static final int
ellipsoidfill
603979841
public static final int
elsecmd
364547
public static final int
elseif
102402
public static final int
end
102409
public static final int
endifcmd
364548
public static final int
energy
1073741935
public static final int
energyunits
545259558
public static final int
error
1073741936
public static final int
eta
1111490565
public static final int
eval
134218759
public static final int
exit
266255
public static final int
exitjmol
266256
public static final int
exportscale
570425357
public static final int
expressionBegin
1073742325
public static final int
expressionEnd
1073742326
public static final int
facecenteroffset
1073741937
public static final int
file
1228935687
public static final int
filecachedirectory
545259559
public static final int
filecaching
603979842
public static final int
fill
1073741938
public static final int
filter
1073741940
public static final int
find
1275068427
public static final int
first
1073741942
public static final int
fixed
12293
public static final int
fixedtemp
1073741946
public static final int
flat
1073741948
public static final int
floatparam
570425344
public static final int
floatproperty
1111490560
public static final int
flowCommand
102400
public static final int
font
4114
public static final int
fontcaching
603979844
public static final int
fontscaling
603979845
public static final int
fontsize
1610612738
public static final int
forceautobond
603979846
public static final int
forcefield
545259560
public static final int
forcmd
134320648
public static final int
formalcharge
1631586315
public static final int
format
1287653388
public static final int
fps
1073741950
public static final int
fractionalrelative
603979848
public static final int
fracx
1111492612
public static final int
fracxyz
1145047051
public static final int
fracy
1111492613
public static final int
fracz
1111492614
public static final int
frame
4115
public static final int
frank
1611272202
public static final int
from
1073741952
public static final int
front
1073741954
public static final int
frontedges
1073741956
public static final int
frontlit
1073741958
public static final int
frontonly
1073741960
public static final int
full
1073741961
public static final int
fullplane
1073741962
public static final int
fullylit
1073741964
public static final int
function
134320141
public static final int
functionxy
1073741966
public static final int
functionxyz
1073741968
public static final int
fux
1111492615
public static final int
fuxyz
1145047053
public static final int
fuy
1111492616
public static final int
fuz
1111492617
public static final int
geosurface
1112150021
public static final int
gestureswipefactor
570425358
public static final int
getproperty
1275072526
public static final int
gotocmd
20500
public static final int
greyscalerendering
603979850
public static final int
gridpoints
1073741970
public static final int
group
1086324742
public static final int
group1
1086324743
public static final int
groupid
1094713356
public static final int
groupindex
1094713357
public static final int
halo
1112152070
public static final int
hash
6
public static final int
hbond
1613238294
public static final int
hbondhxdistancemaximum
570425361
public static final int
hbondnodistancemaximum
570425360
public static final int
hbondsangleminimum
570425359
public static final int
hbondsbackbone
603979852
public static final int
hbondsrasmol
603979853
public static final int
hbondssolid
603979854
public static final int
helix
136314895
public static final int
helix310
2097160
public static final int
helixalpha
2097159
public static final int
helixpi
2097162
public static final int
helixstep
553648144
public static final int
help
20482
public static final int
helppath
545259561
public static final int
hermitelevel
553648145
public static final int
hetero
1612709894
public static final int
hidden
2097194
public static final int
hiddenlinesdashed
603979856
public static final int
hide
12294
public static final int
hidenameinpopup
603979858
public static final int
hidenavigationpoint
603979860
public static final int
hidenotselected
603979862
public static final int
highlight
536870920
public static final int
highresolution
603979864
public static final int
history
1610616855
public static final int
historylevel
553648146
public static final int
hkl
134219265
public static final int
homo
1073741973
public static final int
hover
544771
public static final int
hoverdelay
570425362
public static final int
hoverlabel
545259562
public static final int
hydrogen
1612709900
public static final int
hydrophobicity
1113589786
public static final int
id
1073741974
public static final int
identifier
1073741824
public static final int
identify
1086324745
public static final int
ifcmd
134320649
public static final int
ignore
1073741976
public static final int
image
4120
public static final int
imagestate
603979865
public static final int
implicitStringCommand
20480
public static final int
in
1275068432
public static final int
inchi
1275068433
public static final int
inchikey
1073741978
public static final int
increment
1073741981
public static final int
info
1073741982
public static final int
infofontsize
553648147
public static final int
initialize
4121
public static final int
inline
1073741984
public static final int
inscode
5
public static final int
insertion
1086324746
public static final int
insideout
1073741985
public static final int
integer
2
public static final int
interior
1073741986
public static final int
intermolecular
1073741990
public static final int
internal
1073741988
public static final int
intersection
134217763
public static final int
intparam
553648128
public static final int
intproperty
1094713344
public static final int
intramolecular
1073741989
public static final int
invertSelected
4122
public static final int
isaromatic
1073742331
public static final int
iskiosk
603979866
public static final int
isosurface
135180
public static final int
isosurfacekey
603979867
public static final int
isosurfacepropertysmoothing
603979868
public static final int
isosurfacepropertysmoothingpower
553648148
public static final int
javascript
134238732
public static final int
jmol
1073741991
public static final int
jmolinjspecview
603979869
public static final int
join
1275069446
public static final int
json
1073741992
public static final int
justifymeasurements
603979870
public static final int
keys
1140850706
private static final int
keyword
16
public static final int
label
1825200146
public static final int
language
545259563
public static final int
languagetranslation
603979871
public static final int
last
1073741993
public static final int
lattice
1073741994
public static final int
lcaocartoon
135182
public static final int
leadatom
2097165
public static final int
left
1073741996
public static final int
leftbrace
1073742332
public static final int
leftdivide
268435635
public static final int
leftparen
268435472
public static final int
leftsquare
268435520
public static final int
legacyautobonding
603979872
public static final int
legacyhaddition
603979873
public static final int
legacyjavafloat
603979874
public static final int
length
1140850691
public static final int
lighting
1073741995
public static final int
line
1073741998
public static final int
linedata
1073742000
public static final int
lines
1140850692
public static final int
link
1073741999
public static final int
list
1073742001
public static final int
listf
13
public static final int
load
134222849
public static final int
loadatomdatatolerance
570425363
public static final int
loadformat
545259564
public static final int
loadligandformat
545259565
public static final int
lobe
1073742002
public static final int
log
36869
public static final int
logcommands
603979875
public static final int
logfile
545259566
public static final int
loggestures
603979876
public static final int
loglevel
553648149
public static final int
lonepair
1073742004
public static final int
loop
528411
public static final int
lp
1073742006
public static final int
lumo
1073742008
public static final int
macro
4124
public static final int
macrodirectory
545259567
public static final int
magneticshielding
1111490566
public static final int
manifest
1073742010
public static final int
mapproperty
4125
public static final int
mass
1111490567
public static final int
mathExpressionCommand
36864
public static final int
mathfunc
134217728
public static final int
mathop
268435456
public static final int
mathproperty
1140850688
public static final int
matrix3f
11
public static final int
matrix4f
12
public static final int
max
64
public static final int
maxset
1073742014
public static final int
measure
1745489939
public static final int
measureallmodels
603979877
public static final int
measurementlabels
603979878
public static final int
measurementnumbers
1610612739
public static final int
measurements
537006096
public static final int
measurementunits
545259568
public static final int
menu
1073742015
public static final int
mep
1073742016
public static final int
mesh
1073742018
public static final int
meshRibbon
1112152071
public static final int
meshscale
553648150
public static final int
message
20485
public static final int
messagestylechime
603979879
public static final int
middle
1073742019
public static final int
min
32
public static final int
minbonddistance
570425364
public static final int
minimizationcriterion
570425365
public static final int
minimizationmaxatoms
553648152
public static final int
minimizationrefresh
603979880
public static final int
minimizationsilent
603979881
public static final int
minimizationsteps
553648151
public static final int
minimize
4126
public static final int
minmaxmask
480
public static final int
minpixelselradius
553648153
public static final int
minset
1073742020
public static final int
minus
268435616
public static final int
minusMinus
268435649
public static final int
misc
1073741824
public static final int
mlp
1073742022
public static final int
mo
1073877010
public static final int
mode
1073742024
public static final int
model
1094717454
public static final int
modelbased
1073742027
public static final int
modelindex
1094713359
public static final int
modelkitmode
603983903
public static final int
modify
1073742025
public static final int
modifyorcreate
1073742026
public static final int
modo
1111490586
public static final int
modt1
1111490580
public static final int
modt2
1111490581
public static final int
modt3
1111490582
public static final int
modulateoccupancy
603979884
public static final int
modulation
1275072532
public static final int
modulationscale
570425366
public static final int
modx
1111490583
public static final int
modxyz
1145045008
public static final int
mody
1111490584
public static final int
modz
1111490585
public static final int
molecular
1073742028
public static final int
molecule
1094713360
public static final int
monitorenergy
603979885
public static final int
monomer
1094713361
public static final int
morph
1073742029
public static final int
mouse
1073742030
public static final int
mousedragfactor
570425367
public static final int
mousewheelfactor
570425368
public static final int
move
4128
public static final int
moveto
4129
public static final int
movie
1073742031
public static final int
mrc
1073742032
public static final int
msms
1073742033
public static final int
mul
1275068929
public static final int
mul3
1275068930
public static final int
multiplebondbananas
603979886
public static final int
multiplebondradiusfactor
570425369
public static final int
multiplebondspacing
570425370
public static final int
multiprocessor
603979887
public static final int
mutate
4130
public static final int
nada
0
public static final int
name
1073742034
public static final int
navfps
570425371
public static final int
navigate
4131
public static final int
navigatesurface
603979888
public static final int
navigationdepth
570425372
public static final int
navigationmode
603979889
public static final int
navigationperiodic
603979890
public static final int
navigationslab
570425373
public static final int
navigationspeed
570425374
public static final int
navx
570425376
public static final int
navy
570425378
public static final int
navz
570425380
public static final int
nbo
1073877011
public static final int
nbocharges
603979891
public static final int
nci
1073742036
public static final int
next
1073742037
public static final int
nihresolverformat
545259570
public static final int
nmr
1073742038
public static final int
nmrpredictformat
545259569
public static final int
nmrurlformat
545259571
public static final int
noArgs
262144
public static final int
nobackshell
1073742057
public static final int
nocontourlines
1073742039
public static final int
nocross
1073742040
public static final int
nodebug
1073742041
public static final int
nodelay
603979892
public static final int
nodots
1073742042
public static final int
noedges
1073742044
public static final int
nofill
1073742046
public static final int
nohead
1073742048
public static final int
noload
1073742050
public static final int
nomesh
1073742052
public static final int
none
1073742333
public static final int
noplane
1073742054
public static final int
normal
1073742056
public static final int
notfrontonly
1073742058
public static final int
notriangles
1073742060
public static final int
now
134218760
public static final int
nucleic
2097166
public static final int
obj
1073742062
public static final int
object
1073742064
public static final int
occupancy
1128269825
public static final int
off
1073742334
public static final int
offset
1073742066
public static final int
offsetside
1073742068
public static final int
omega
1111490568
public static final int
on
1073742335
public static final int
once
1073742070
public static final int
only
1073742072
public static final int
opAnd
268435552
public static final int
opAND
268435584
public static final int
opaque
1073742074
public static final int
opEQ
268435860
public static final int
opGE
268435857
public static final int
opGT
268435856
public static final int
opIf
805306401
public static final int
opLE
268435858
public static final int
opLIKE
268435862
public static final int
opLT
268435859
public static final int
opNE
268435861
public static final int
opNot
268435568
public static final int
opOr
268435536
public static final int
options
1073742075
public static final int
opToggle
268435538
public static final int
opXor
268435537
public static final int
orbital
1073742076
public static final int
orientation
1073742077
public static final int
origin
1073742078
public static final int
out
1073742079
public static final int
packed
1073742080
public static final int
palindrome
1073742082
public static final int
parallel
102436
public static final int
parameters
1073742083
public static final int
paramTypes
662700032
public static final int
partialcharge
1111492619
public static final int
partialdots
603979893
public static final int
particleradius
570425381
public static final int
path
1073742084
public static final int
pathforallfiles
545259572
public static final int
pause
20487
public static final int
pdb
1073742086
public static final int
pdbaddhydrogens
603979894
public static final int
pdbgetheader
603979895
public static final int
pdbheader
1073742088
public static final int
pdbsequential
603979896
public static final int
per
1073742336
public static final int
percent
268435634
public static final int
percentvdwatom
553648154
public static final int
period
1073742090
public static final int
perpendicular
1073742092
public static final int
perper
1073742337
public static final int
perspectivedepth
603979897
public static final int
perspectivemodel
553648155
public static final int
phase
1073742094
public static final int
phi
1111490569
public static final int
phongexponent
553648156
public static final int
picking
545259573
public static final int
pickingspinrate
553648157
public static final int
pickingstyle
545259574
public static final int
picklabel
545259576
public static final int
pivot
1275068437
public static final int
planarparam
1073742099
public static final int
plane
134217750
public static final int
platformspeed
553648158
public static final int
play
1073742096
public static final int
playrev
1073742098
public static final int
plot
4133
public static final int
plot3d
135190
public static final int
plus
268435617
public static final int
plusPlus
268435650
public static final int
pmesh
135188
public static final int
pocket
1073742100
public static final int
point
134217751
public static final int
point3f
8
public static final int
point4f
9
public static final int
pointgroup
134217762
public static final int
pointgroupdistancetolerance
570425382
public static final int
pointgrouplineartolerance
570425384
public static final int
pointsperangstrom
1073742104
public static final int
polygon
1073742106
public static final int
polyhedra
1275203608
public static final int
polymer
1094713362
public static final int
polymerlength
1094713363
public static final int
pop
1275334681
public static final int
predefinedset
2097152
public static final int
preservestate
603979898
public static final int
prev
1073742108
public static final int
print
36865
public static final int
privat
4134
public static final int
probe
1073742109
public static final int
process
102439
public static final int
prompt
134256131
public static final int
property
1715472409
public static final int
propertyatomnumbercolumncount
553648160
public static final int
propertyatomnumberfield
553648159
public static final int
propertycolorscheme
545259578
public static final int
propertydatacolumncount
553648162
public static final int
propertydatafield
553648164
public static final int
PROPERTYFLAGS
1136656384
public static final int
propselector
268435665
public static final int
protein
2097168
public static final int
psi
1111490570
public static final int
purine
2097170
public static final int
push
1275335685
public static final int
pymol
1073742110
public static final int
pyrimidine
2097172
public static final int
quaternion
134221850
public static final int
quaternionframe
545259580
public static final int
quit
266281
public static final int
rad
1073742111
public static final int
radical
1073742112
public static final int
radius
1665140738
public static final int
ramachandran
4138
public static final int
random
134219268
public static final int
range
1073742114
public static final int
rangeselected
603979899
public static final int
rasmol
1073742116
public static final int
redomove
4139
public static final int
reference
1073742118
public static final int
refresh
266284
public static final int
refreshing
603979900
public static final int
remove
1073742119
public static final int
repaintwaitms
553648165
public static final int
replace
1275068443
public static final int
reset
4141
public static final int
residue
1073742120
public static final int
resno
1094715412
public static final int
resolution
1073742122
public static final int
restore
4142
public static final int
restrict
12295
public static final int
resume
4143
public static final int
returncmd
36866
public static final int
reverse
1140850693
public static final int
reversecolor
1073742124
public static final int
rewind
1073742125
public static final int
ribbon
1112152073
public static final int
ribbonaspectratio
553648166
public static final int
ribbonborder
603979901
public static final int
right
1073742126
public static final int
rightbrace
1073742338
public static final int
rightparen
268435473
public static final int
rightsquare
268435521
public static final int
rmsd
1073742127
public static final int
rna
2097174
public static final int
rna3d
1073742128
public static final int
rock
1073742129
public static final int
rocket
1112152074
public static final int
rocketbarrels
603979902
public static final int
rotate
528432
public static final int
rotate45
1073742130
public static final int
rotateSelected
4145
public static final int
rotation
1073742132
public static final int
rotationradius
570425388
public static final int
row
1275068935
public static final int
rubberband
1073742134
public static final int
sasurface
1073742135
public static final int
save
4146
public static final int
saved
1073742136
public static final int
saveproteinstructurestate
603979903
public static final int
scale
1073742138
public static final int
scale3d
1610612740
public static final int
scaleangstromsperinch
570425390
public static final int
scene
1073742139
public static final int
screenx
1111490571
public static final int
screenxyz
1145047052
public static final int
screeny
1111490572
public static final int
screenz
1111490573
public static final int
script
134222850
public static final int
scriptCommand
4096
public static final int
scriptqueue
603979904
public static final int
scriptreportinglevel
553648168
public static final int
search
134218756
public static final int
select
1275082245
public static final int
selectallmodels
603979906
public static final int
selected
1113589787
public static final int
selectedfloat
224
public static final int
selecthetero
603979908
public static final int
selecthydrogen
603979910
public static final int
selection
1073742140
public static final int
selectionhalos
1611141171
public static final int
semicolon
1073742339
public static final int
seqcode
1086324747
public static final int
seqid
1094713365
public static final int
sequence
1086324744
public static final int
set
36867
public static final int
setparam
536870912
public static final int
settable
2048
public static final int
shape
1086324748
public static final int
shapeCommand
135168
public static final int
shapely
1073742144
public static final int
sheet
2097184
public static final int
sheetsmoothing
570425392
public static final int
show
134222350
public static final int
showaxes
603979914
public static final int
showboundbox
603979916
public static final int
showfrank
603979918
public static final int
showhiddenselectionhalos
603979920
public static final int
showhydrogens
603979922
public static final int
showkeystrokes
603979924
public static final int
showmeasurements
603979926
public static final int
showmodvecs
603979927
public static final int
showmultiplebonds
603979928
public static final int
shownavigationpointalways
603979930
public static final int
showscript
536870922
public static final int
showtiming
603979934
public static final int
showunitcell
603979936
public static final int
showunitcelldetails
603979937
public static final int
sidechain
2097178
public static final int
sigma
1073742146
public static final int
sign
1073742147
public static final int
silent
1073742148
public static final int
sin
134218244
public static final int
site
1094713366
public static final int
size
1140850694
public static final int
slab
554176565
public static final int
slabbyatom
603979939
public static final int
slabbymolecule
603979940
public static final int
slabenabled
603979942
public static final int
slabrange
570425393
public static final int
smallmoleculemaxatoms
553648170
public static final int
smartaromatic
603979944
public static final int
smiles
134218757
public static final int
smiles2dimageformat
545259584
public static final int
smilesurlformat
545259582
public static final int
solid
1073742150
public static final int
solvent
1612709912
public static final int
solventprobe
603979948
public static final int
solventproberadius
570425394
public static final int
sort
1275068444
public static final int
spacebeforesquare
1073742195
public static final int
spacefill
1112152075
public static final int
spacegroup
134217764
public static final int
spec_alternate
1073742355
public static final int
spec_atom
1073742356
public static final int
spec_chain
1073742357
public static final int
spec_model
1073742358
public static final int
spec_model2
1073742359
public static final int
spec_name_pattern
1073742360
public static final int
spec_resid
1073742361
public static final int
spec_seqcode
1073742362
public static final int
spec_seqcode_range
1073742363
public static final int
specialposition
2097196
public static final int
specular
536870924
public static final int
specularexponent
553648172
public static final int
specularpercent
553648174
public static final int
specularpower
553648176
public static final int
sphere
1073742154
public static final int
spin
1611141175
public static final int
spine
2097186
public static final int
spinfps
570425396
public static final int
spinx
570425398
public static final int
spiny
570425400
public static final int
spinz
570425402
public static final int
split
1275069447
public static final int
sqrt
134218246
public static final int
squared
1073742156
public static final int
ssbond
1611141176
public static final int
ssbondsbackbone
603979952
public static final int
star
1112152076
public static final int
starwidth
570425403
public static final int
state
1073742158
public static final int
statusreporting
603979954
public static final int
stddev
192
public static final int
stdinchi
1073742159
public static final int
stdinchikey
1073742160
public static final int
step
266298
public static final int
stereo
528443
public static final int
stereodegrees
570425404
public static final int
stop
1073742162
public static final int
straightness
1111490574
public static final int
strandcount
553648178
public static final int
strandcountformeshribbon
553648180
public static final int
strandcountforstrands
553648182
public static final int
strands
1649022989
public static final int
string
4
public static final int
strparam
545259520
public static final int
strproperty
1086324736
public static final int
strucid
1086324749
public static final int
strucno
1094713367
public static final int
structure
1639976963
public static final int
strutdefaultradius
570425406
public static final int
strutlengthmaximum
570425408
public static final int
struts
659482
public static final int
strutsmultiple
603979955
public static final int
strutspacing
553648184
public static final int
sub
1275068931
public static final int
subset
2109448
public static final int
substructure
1237320707
public static final int
subsystem
1094713368
public static final int
sum
128
public static final int
sum2
160
public static final int
supercell
1073742163
public static final int
surface
2097180
public static final int
surfacedistance
1111490575
public static final int
switchcmd
102410
public static final int
symbol
1086326798
public static final int
symmetry
1088421903
public static final int
symop
1296041986
public static final int
sync
4156
public static final int
syncmouse
603979956
public static final int
syncscript
603979958
public static final int
temperature
1111492620
public static final int
tensor
1275068445
public static final int
testflag1
603979960
public static final int
testflag2
603979962
public static final int
testflag3
603979964
public static final int
testflag4
603979965
public static final int
theta
1111490576
public static final int
thismodel
2097182
public static final int
throwcmd
36870
public static final int
ticks
1073742164
public static final int
timeout
536875070
public static final int
times
268435633
public static final int
timestimes
268435651
public static final int
title
1073742166
public static final int
titleformat
1073742168
public static final int
to
1073742170
public static final int
togglelabel
1610612741
public static final int
top
1073742172
public static final int
torsion
1073742174
public static final int
trace
1112152078
public static final int
tracealpha
603979966
public static final int
trajectory
536870926
public static final int
transform
1073742176
public static final int
translate
4160
public static final int
translateSelected
4162
public static final int
translation
1073742178
public static final int
translucent
603979967
public static final int
triangles
1073742182
public static final int
trim
1275068932
public static final int
trycmd
364558
public static final int
twistedsheets
603979968
public static final int
type
1140850696
public static final int
unaryMinus
268435648
public static final int
unbind
4164
public static final int
undo
536870928
public static final int
undomove
4165
public static final int
unitcell
1814695966
public static final int
unitcellcolor
545259586
public static final int
unitx
1111490577
public static final int
unitxyz
1145045006
public static final int
unity
1111490578
public static final int
unitz
1111490579
public static final int
url
1073742184
public static final int
useminimizationthread
603979970
public static final int
usenumberlocalization
603979971
public static final int
user
1073742186
public static final int
usercolorscheme
536870930
public static final int
val
1073742188
public static final int
valence
1094715417
public static final int
validation
1073742189
public static final int
vanderwaals
1648363544
public static final int
var
36868
public static final int
variable
1073742190
public static final int
variables
1073742192
public static final int
varray
7
public static final int
vector
135198
public static final int
vectorscale
1648361473
public static final int
vectorscentered
603979972
public static final int
vectorsymmetry
603979973
public static final int
vectortrail
553648185
public static final int
vertices
1073742194
public static final int
vibration
4166
public static final int
vibrationperiod
570425412
public static final int
vibrationscale
570425414
public static final int
vibx
1111492626
public static final int
vibxyz
1145047055
public static final int
viby
1111492627
public static final int
vibz
1111492628
public static final int
visible
2097198
public static final int
visualrange
570425416
public static final int
volume
1312817669
public static final int
w
1140850705
public static final int
waitformoveto
603979975
public static final int
whilecmd
102406
public static final int
width
1073742196
public static final int
wigner
1073742197
public static final int
window
536870932
public static final int
windowcentered
603979976
public static final int
wireframe
659488
public static final int
wireframerotation
603979977
public static final int
within
134217759
public static final int
write
134221856
public static final int
x
1111492629
public static final int
xyz
1145047050
public static final int
y
1111492630
public static final int
z
1111492631
public static final int
zap
12297
public static final int
zdepth
553648186
public static final int
zerobasedxyzrasmol
603979978
public static final int
zoom
4168
public static final int
zoomenabled
603979980
public static final int
zoomheight
603979982
public static final int
zoomlarge
603979983
public static final int
zoomTo
4170
public static final int
zshade
603979984
public static final int
zshadepower
553648190
public static final int
zslab
553648188
-
org.jmol.scriptext.CmdExt Modifier and Type Constant Field Value static final int
ERROR_invalidArgument
22
-
org.jmol.shape.Axes Modifier and Type Constant Field Value private static final float
MIN_AXIS_LEN
1.5f
-
org.jmol.shape.Echo Modifier and Type Constant Field Value private static final short
COLOR
10
private static final java.lang.String
FONTFACE
"Serif"
private static final int
FONTSIZE
20
-
org.jmol.shape.Frank Modifier and Type Constant Field Value static final java.lang.String
defaultFontName
"SansSerif"
static final int
defaultFontSize
16
static final java.lang.String
defaultFontStyle
"Plain"
public static final int
frankMargin
4
-
org.jmol.shape.Hover Modifier and Type Constant Field Value private static final java.lang.String
FONTFACE
"SansSerif"
private static final int
FONTSIZE
12
private static final java.lang.String
FONTSTYLE
"Plain"
-
org.jmol.shape.Mesh Modifier and Type Constant Field Value public static final java.lang.String
PREVIOUS_MESH_ID
"+PREVIOUS_MESH+"
-
org.jmol.shape.MeshCollection Modifier and Type Constant Field Value public static final java.lang.String
PREVIOUS_MESH_ID
"+PREVIOUS_MESH+"
-
org.jmol.shape.Shape Modifier and Type Constant Field Value public static final float
RADIUS_MAX
4.0f
-
org.jmol.shape.Sticks Modifier and Type Constant Field Value private static final int
MAX_BOND_CLICK_DISTANCE_SQUARED
100
private static final int
XY_THREASHOLD
40
-
org.jmol.shapebio.BioShape Modifier and Type Constant Field Value private static final double
eightPiSquared100
7895.6835208714865
-
org.jmol.shapebio.Trace Modifier and Type Constant Field Value private static final int
PUTTY_AbsoluteLinear
7
private static final int
PUTTY_AbsoluteNonlinear
3
private static final int
PUTTY_ImpliedRMS
8
private static final int
PUTTY_NormalizedLinear
4
private static final int
PUTTY_NormalizedNonlinear
0
private static final int
PUTTY_RelativeLinear
5
private static final int
PUTTY_RelativeNonlinear
1
private static final int
PUTTY_ScaledLinear
6
private static final int
PUTTY_ScaledNonlinear
2
-
org.jmol.shapecgo.CGOMesh Modifier and Type Constant Field Value public static final int
ALPHA
25
public static final int
ALPHA_TRIANGLE
17
public static final int
BEGIN
2
public static final int
CHAR
23
public static final int
COLOR
6
public static final int
CONE
27
public static final int
CUSTOM_CYLINDER
15
public static final int
CYLINDER
9
public static final int
DISABLE
13
public static final int
DOTWIDTH
16
public static final int
ELLIPSOID
18
public static final int
ENABLE
12
public static final int
END
3
public static final int
FONT
19
public static final int
FONT_AXES
22
public static final int
FONT_SCALE
20
public static final int
FONT_VERTEX
21
public static final int
GL_LINE_LOOP
2
public static final int
GL_LINE_STRIP
3
public static final int
GL_LINES
1
public static final int
GL_POINTS
0
public static final int
GL_TRIANGLE_FAN
6
public static final int
GL_TRIANGLE_STRIP
5
public static final int
GL_TRIANGLES
4
public static final int
INDENT
24
public static final int
JMOL_DIAMETER
-100
public static final int
JMOL_PS
-103
public static final int
JMOL_SCREEN
-101
public static final int
JMOL_UVMAP
-102
private static final java.lang.String
KEY_LIST
"BEGIN:2 END:3 STOP:0 POINT:0 POINTS:0 LINES:1 LINE_LOOP:2 LINE_STRIP:3 TRIANGLES:4 TRIANGLE_STRIP:5 TRIANGLE_FAN:6 LINE:1 VERTEX:4 NORMAL:5 COLOR:6 LINEWIDTH:10 SAUSAGE:14 DIAMETER:-100 SCREEN:-101 UVMAP:-102 PS:-103 NEWPATH:-104 CLOSEPATH:-105 STROKE:-106 SETLINEWIDTH:-107 SCALE:-108 MOVETO:-109 LINETO:-110 SHOWPAGE:-111"
public static final int
LINEWIDTH
10
public static final int
NORMAL
5
public static final int
PICK_COLOR
29
public static final int
PS_CLOSEPATH
-105
public static final int
PS_LINETO
-110
public static final int
PS_MOVETO
-109
public static final int
PS_NEWPATH
-104
public static final int
PS_SCALE
-108
public static final int
PS_SETLINEWIDTH
-107
public static final int
PS_SHOWPAGE
-111
public static final int
PS_STROKE
-106
public static final int
QUADRIC
26
public static final int
RESET_NORMAL
28
public static final int
SAUSAGE
14
public static final int
SIMPLE_LINE
1
public static final int
SPHERE
7
public static final int
STOP
0
public static final int
TRICOLOR_TRIANGLE
8
public static final int
VERTEX
4
public static final int
WIDTHSCALE
11
-
org.jmol.shapespecial.Dipole Modifier and Type Constant Field Value static final short
DIPOLE_TYPE_ATOMS
2
static final short
DIPOLE_TYPE_BOND
3
static final short
DIPOLE_TYPE_MOLECULAR
4
static final short
DIPOLE_TYPE_POINTS
1
static final short
DIPOLE_TYPE_POINTVECTOR
5
static final short
DIPOLE_TYPE_UNKNOWN
0
-
org.jmol.shapespecial.Dipoles Modifier and Type Constant Field Value static final short
DEFAULT_MAD
10
static final float
DEFAULT_OFFSETSIDE
0.4000000059604645f
private static final float
E_ANG_PER_DEBYE
0.20819400250911713f
-
org.jmol.shapespecial.Dots Modifier and Type Constant Field Value static final float
SURFACE_DISTANCE_FOR_CALCULATION
10.0f
-
org.jmol.shapespecial.Draw Modifier and Type Constant Field Value private static final int
MAX_OBJECT_CLICK_DISTANCE_SQUARED
100
private static final int
PT_BITSET
3
private static final int
PT_COORD
1
private static final int
PT_IDENTIFIER
2
private static final int
PT_MODEL_BASED_POINTS
5
private static final int
PT_MODEL_INDEX
4
-
org.jmol.shapespecial.Ellipsoids Modifier and Type Constant Field Value private static final int
MAX_OBJECT_CLICK_DISTANCE_SQUARED
100
private static final java.lang.String
PROPERTY_MODES
"ax ce co de eq mo on op sc tr la"
-
org.jmol.shapespecial.Polyhedra Modifier and Type Constant Field Value private static final float
CONVEX_HULL_MAX
0.05000000074505806f
private static final float
DEFAULT_FACECENTEROFFSET
0.25f
private static final float
DEFAULT_PLANAR_PARAM
0.9800000190734863f
public static final int
EDGES_ALL
1
public static final int
EDGES_FRONT
2
private static final int
EDGES_NONE
0
public static final int
EDGES_ONLY
3
private static final int
FACE_COUNT_MAX
247
private static final int
MAX_OTHER
498
private static final int
MAX_VERTICES
250
private static final int
MODE_BITSET
4
private static final int
MODE_BONDING
1
private static final int
MODE_INFO
6
private static final int
MODE_POINTS
2
private static final int
MODE_RADIUS
3
private static final int
MODE_UNITCELL
5
-
org.jmol.shapesurface.Isosurface Modifier and Type Constant Field Value private static final int
MAX_OBJECT_CLICK_DISTANCE_SQUARED
100
-
org.jmol.smiles.org.jmol.smiles.PolyhedronStereoSorter Modifier and Type Constant Field Value private static final float
MIN_ALIGNED
0.1745329201221466f
-
org.jmol.smiles.SmilesAtom Modifier and Type Constant Field Value static final java.lang.String
UNBRACKETED_SET
"B, C, N, O, P, S, F, Cl, Br, I, *,"
-
org.jmol.smiles.SmilesBond Modifier and Type Constant Field Value private static final java.lang.String
ALL_BONDS
"-=#$:/\\.~^`+!,&;@"
private static final java.lang.String
SMILES_BONDS
"-=#$:/\\.~^`"
public static final int
TYPE_ANY
81
public static final int
TYPE_AROMATIC
17
public static final int
TYPE_BIO_CROSSLINK
112
public static final int
TYPE_BIO_SEQUENCE
96
public static final int
TYPE_NONE
0
public static final int
TYPE_RING
65
public static final int
TYPE_UNKNOWN
-1
-
org.jmol.smiles.SmilesMatcher Modifier and Type Constant Field Value private static final int
MODE_ARRAY
2
private static final int
MODE_ATROP
4
private static final int
MODE_BITSET
1
private static final int
MODE_MAP
3
-
org.jmol.smiles.SmilesMeasure Modifier and Type Constant Field Value private static final float
radiansPerDegree
0.01745329238474369f
static final java.lang.String
TYPES
"__dat"
-
org.jmol.smiles.SmilesSearch Modifier and Type Constant Field Value private static final int
ATROPIC_SWITCH
1
private static final int
SUBMODE_NESTED
1
private static final int
SUBMODE_OR
3
private static final int
SUBMODE_RINGCHECK
2
-
org.jmol.smiles.SmilesStereo Modifier and Type Constant Field Value public static final int
ALLENE
2
public static final int
DEFAULT
0
public static final int
OCTAHEDRAL
6
public static final int
POLYHEDRAL
1
public static final int
SEESAW
9
public static final int
SQUARE_PLANAR
7
public static final int
T_SHAPED
8
public static final int
TETRAHEDRAL
4
public static final int
TRIGONAL_BIPYRAMIDAL
5
public static final int
TRIGONAL_PYRAMIDAL
3
-
org.jmol.symmetry.CIPChirality Modifier and Type Constant Field Value static final int
A_WINS
-1
static final int
B_WINS
1
static final int
IGNORE
-2147483648
static final int
MAX_PATH
50
static final int
NO_CHIRALITY
0
static final int
RULE_1a
1
static final int
RULE_1b
2
static final int
RULE_2
3
static final java.lang.String
RULE_2_nXX_EQ_XX
";9Be;19F;23Na;27Al;31P;45Sc;55Mn;59Co;75As;89Y;93Nb;98Tc;103Rh;127I;133Cs;141Pr;145Pm;159Tb;165Ho;169Tm;197Au;209Bi;209Po;210At;222Rn;223Fr;226Ra;227Ac;231Pa;232Th;and all > U (atomno > 92)"
static final java.lang.String
RULE_2_REDUCE_ISOTOPE_MASS_NUMBER
";16O;52Cr;96Mo;175Lu;"
static final int
RULE_3
4
static final int
RULE_4a
5
static final int
RULE_4b
6
static final int
RULE_4c
7
static final int
RULE_5
8
static final int
RULE_6
9
static final int
SMALL_RING_MAX
7
static final int
STEREO_BOTH_EZ
15
static final int
STEREO_BOTH_RS
3
static final int
STEREO_E
14
static final int
STEREO_M
17
static final int
STEREO_P
18
static final int
STEREO_R
1
static final int
STEREO_S
2
static final int
STEREO_Z
13
static final int
TIED
0
static final int
UNDETERMINED
-1
-
org.jmol.symmetry.CIPData Modifier and Type Constant Field Value static final float
TRIGONALITY_MIN
0.20000000298023224f
-
org.jmol.symmetry.org.jmol.symmetry.PointGroup Modifier and Type Constant Field Value private static final int
ATOM_COUNT_MAX
100
private static final int
c2
16
private static final int
c3
17
private static final int
c4
18
private static final int
c5
19
private static final int
c6
20
private static final int
c8
22
private static final int
firstProper
14
static final int
OPERATION_IMPROPER_AXIS
2
static final int
OPERATION_INVERSION_CENTER
3
static final int
OPERATION_PLANE
0
static final int
OPERATION_PROPER_AXIS
1
private static final int
s10
10
private static final int
s12
12
private static final int
s3
3
private static final int
s4
4
private static final int
s5
5
private static final int
s6
6
private static final int
s8
8
-
org.jmol.symmetry.org.jmol.symmetry.SpaceGroup Modifier and Type Constant Field Value private static final int
NAME_HALL
5
private static final int
NAME_HM
3
private static final int
NAME_UNK
0
-
org.jmol.symmetry.SymmetryDesc Modifier and Type Constant Field Value private static final int
KEY_DRAW
3
private static final int
KEY_POINT
7
-
org.jmol.symmetry.SymmetryOperation Modifier and Type Constant Field Value private static final int
DIVISOR_MASK
255
private static final int
DIVISOR_OFFSET
8
-
org.jmol.symmetry.org.jmol.symmetry.UnitCell Modifier and Type Constant Field Value private static final double
twoP2
19.739208802178716
-
org.jmol.thread.JmolThread Modifier and Type Constant Field Value protected static final int
CHECK1
1
protected static final int
CHECK2
2
protected static final int
CHECK3
3
protected static final int
FINISH
-2
protected static final int
INIT
-1
protected static final int
MAIN
0
-
org.jmol.util.BoxInfo Modifier and Type Constant Field Value public static final int
X
4
public static final int
XYZ
7
public static final int
Y
2
public static final int
Z
1
-
org.jmol.util.C Modifier and Type Constant Field Value public static final int
ALPHA_SHIFT
13
public static final short
BLACK
4
public static final short
BLUE
7
public static final short
CHANGEABLE_MASK
-32768
public static final short
CYAN
9
public static final short
GOLD
23
public static final short
GRAY
12
public static final short
GREEN
11
public static final short
HOTPINK
22
public static final short
INHERIT_ALL
0
public static final short
INHERIT_COLOR
1
public static final int
LAST_AVAILABLE_COLIX
2047
public static final short
LIME
14
public static final short
MAGENTA
20
public static final short
MAROON
15
public static final short
NAVY
16
public static final short
OLIVE
17
public static final short
OPAQUE_MASK
-30721
public static final short
ORANGE
5
public static final short
PINK
6
public static final short
PURPLE
18
public static final short
RAW_RGB
3
private static final int
RAW_RGB_INT
3
public static final short
RED
10
public static final short
SILVER
13
public static final short
SPECIAL_COLIX_MAX
4
public static final short
TEAL
19
public static final int
TRANSLUCENT_MASK
30720
public static final int
TRANSLUCENT_SCREENED
30720
public static final int
TRANSLUCENT_SHIFT
11
public static final int
TRANSPARENT
16384
public static final short
UNMASK_CHANGEABLE_TRANSLUCENT
2047
public static final short
USE_PALETTE
2
public static final short
WHITE
8
public static final short
YELLOW
21
-
org.jmol.util.ColorEncoder Modifier and Type Constant Field Value public static final int
ALT
16
public static final int
AMINO
5
public static final int
BGYOR
1
public static final int
BW
10
public static final int
BWR
7
private static final java.lang.String
BYELEMENT_JMOL
"byelement_jmol"
public static final java.lang.String
BYELEMENT_PREFIX
"byelement"
private static final java.lang.String
BYELEMENT_RASMOL
"byelement_rasmol"
private static final java.lang.String
BYRESIDUE_AMINO
"byresidue_amino"
private static final java.lang.String
BYRESIDUE_NUCLEIC
"byresidue_nucleic"
public static final java.lang.String
BYRESIDUE_PREFIX
"byresidue"
private static final java.lang.String
BYRESIDUE_SHAPELY
"byresidue_shapely"
public static final int
CUSTOM
-1
public static final int
FRIENDLY
12
private static final int
GRAY
-8355712
public static final int
HIGH
9
public static final int
INHERIT
15
public static final int
JMOL
2
public static final int
LOW
8
public static final int
NUCLEIC
17
public static final int
RASMOL
3
public static final int
RESU
-14
public static final int
ROYGB
0
public static final int
RWB
6
public static final int
SHAPELY
4
public static final int
USER
-13
public static final int
WB
11
-
org.jmol.util.CommandHistory Modifier and Type Constant Field Value static final int
DEFAULT_MAX_SIZE
100
public static final java.lang.String
ERROR_FLAG
"#??"
public static final java.lang.String
NOHISTORYATALL_FLAG
"#----"
public static final java.lang.String
NOHISTORYLINE_FLAG
"#--"
-
org.jmol.util.Edge Modifier and Type Constant Field Value private static final int
ATROPISOMER_SHIFT
11
public static final int
BOND_AROMATIC
515
public static final int
BOND_AROMATIC_DOUBLE
514
public static final int
BOND_AROMATIC_MASK
512
public static final int
BOND_AROMATIC_SINGLE
513
public static final int
BOND_COVALENT_DOUBLE
2
public static final int
BOND_COVALENT_MASK
1023
public static final int
BOND_COVALENT_QUADRUPLE
4
public static final int
BOND_COVALENT_QUINTUPLE
5
public static final int
BOND_COVALENT_sextuple
6
public static final int
BOND_COVALENT_SINGLE
1
public static final int
BOND_COVALENT_TRIPLE
3
public static final int
BOND_H_CALC
4096
public static final int
BOND_H_CALC_MASK
28672
public static final int
BOND_H_MINUS_3
14336
public static final int
BOND_H_MINUS_4
16384
public static final int
BOND_H_NUCLEOTIDE
18432
public static final int
BOND_H_PLUS_2
6144
public static final int
BOND_H_PLUS_3
8192
public static final int
BOND_H_PLUS_4
10240
public static final int
BOND_H_PLUS_5
12288
public static final int
BOND_H_REGULAR
2048
public static final int
BOND_HBOND_SHIFT
11
public static final int
BOND_HYDROGEN_MASK
30720
public static final int
BOND_NEW
131072
public static final int
BOND_ORDER_ANY
65535
public static final int
BOND_ORDER_NULL
131071
public static final int
BOND_ORDER_UNSPECIFIED
17
public static final int
BOND_PARTIAL_MASK
224
public static final int
BOND_PARTIAL01
33
public static final int
BOND_PARTIAL12
66
public static final int
BOND_PARTIAL23
97
public static final int
BOND_PARTIAL32
100
public static final int
BOND_PYMOL_MULT
98304
public static final int
BOND_PYMOL_NOMULT
65536
public static final int
BOND_RENDER_SINGLE
65536
public static final int
BOND_STEREO_FAR
1041
public static final int
BOND_STEREO_MASK
1024
public static final int
BOND_STEREO_NEAR
1025
public static final int
BOND_STRUT
32768
public static final int
BOND_SULFUR_MASK
256
public static final int
TYPE_ATROPISOMER
65537
public static final int
TYPE_ATROPISOMER_REV
65538
-
org.jmol.util.Elements Modifier and Type Constant Field Value public static final int
firstIsotope
4
public static final int
FORMAL_CHARGE_MAX
7
public static final int
FORMAL_CHARGE_MIN
-4
private static final java.lang.String
naturalIsotopes
"1H,12C,14N"
public static final int
RAD_COV_BODR_2014_02_22
1
public static final int
RAD_COV_IONIC_OB1_100_1
0
public static final java.lang.String
VdwPROBE
"#VDW radii for PROBE;{_H}.vdw = 1.0;{_H and connected(_C) and not connected(within(smiles,\'[a]\'))}.vdw = 1.17;{_C}.vdw = 1.75;{_C and connected(3) and connected(_O)}.vdw = 1.65;{_N}.vdw = 1.55;{_O}.vdw = 1.4;{_P}.vdw = 1.8;{_S}.vdw = 1.8;message VDW radii for H, C, N, O, P, and S set according to Word, et al., J. Mol. Biol. (1999) 285, 1711-1733"
-
org.jmol.util.Font Modifier and Type Constant Field Value private static final int
FONT_ALLOCATION_UNIT
8
public static final int
FONT_FACE_MONO
2
public static final int
FONT_FACE_SANS
0
public static final int
FONT_FACE_SERIF
1
public static final int
FONT_STYLE_BOLD
1
public static final int
FONT_STYLE_BOLDITALIC
3
public static final int
FONT_STYLE_ITALIC
2
public static final int
FONT_STYLE_PLAIN
0
-
org.jmol.util.GData Modifier and Type Constant Field Value public static final byte
ENDCAPS_FLAT
2
public static final byte
ENDCAPS_FLAT_TO_SPHERICAL
5
public static final byte
ENDCAPS_HIDDEN
1
public static final byte
ENDCAPS_NONE
0
public static final byte
ENDCAPS_OPEN_TO_SPHERICAL
4
public static final byte
ENDCAPS_SPHERICAL
3
public static final int
EXPORT_CARTESIAN
1
public static final int
EXPORT_NOT
0
public static final int
EXPORT_RAYTRACER
2
public static final int
HUGE
-1
public static final int
xGT
4
public static final int
xLT
8
public static final int
yGT
1
public static final int
yLT
2
public static final int
zGT
16
public static final int
zLT
32
-
org.jmol.util.GenericApplet Modifier and Type Constant Field Value private static final int
SCRIPT_CHECK
0
private static final int
SCRIPT_NOWAIT
2
private static final int
SCRIPT_WAIT
1
-
org.jmol.util.Geodesic Modifier and Type Constant Field Value private static final int
maxLevel
3
private static final float
oneFifth
1.2566370964050293f
private static final float
oneTenth
0.6283185482025146f
public static final int
standardLevel
3
private static final boolean
VALIDATE
true
-
org.jmol.util.JmolAudio Modifier and Type Constant Field Value private static final int
MAX_LOOP
10
-
org.jmol.util.JSONWriter Modifier and Type Constant Field Value private static final java.lang.String
SPACES
"\t\t\t\t\t\t\t\t\t\t\t\t\t\t"
-
org.jmol.util.Logger Modifier and Type Constant Field Value public static final int
LEVEL_DEBUG
5
public static final int
LEVEL_DEBUGHIGH
6
public static final int
LEVEL_ERROR
2
public static final int
LEVEL_FATAL
1
public static final int
LEVEL_INFO
4
public static final int
LEVEL_MAX
7
public static final int
LEVEL_WARN
3
-
org.jmol.util.MeshCapper Modifier and Type Constant Field Value private static final int
ASCENDER
1
private static final int
DESCENDER
0
private static final int
LAST
2
-
org.jmol.util.MeshSurface Modifier and Type Constant Field Value public static final int
P_CHECK
3
public static final int
P_CONTOUR
4
public static final int
P_EXPLICIT_COLOR
4
protected static final int
SEED_COUNT
25
-
org.jmol.util.Modulation Modifier and Type Constant Field Value private static final double
TWOPI
6.283185307179586
public static final char
TYPE_DISP_FOURIER
102
public static final char
TYPE_DISP_LEGENDRE
108
public static final char
TYPE_DISP_SAWTOOTH
115
public static final char
TYPE_OCC_CRENEL
99
public static final char
TYPE_OCC_FOURIER
111
public static final char
TYPE_SPIN_FOURIER
109
public static final char
TYPE_SPIN_SAWTOOTH
116
public static final char
TYPE_U_FOURIER
117
public static final char
TYPE_U_LEGENDRE
76
-
org.jmol.util.Normix Modifier and Type Constant Field Value private static final int
NORMIX_GEODESIC_LEVEL
3
public static final short
NORMIX_NULL
9999
-
org.jmol.util.Shader Modifier and Type Constant Field Value public static final int
maxSphereCache
128
private static final int
SDIM
40
public static final int
SHADE_INDEX_LAST
63
private static final int
SHADE_INDEX_MAX
64
public static final byte
SHADE_INDEX_NOISY_LIMIT
56
public static final byte
SHADE_INDEX_NORMAL
52
private static final int
SLIM
20
-
org.jmol.util.SimpleUnitCell Modifier and Type Constant Field Value public static final int
INFO_A
0
public static final int
INFO_ALPHA
3
public static final int
INFO_B
1
public static final int
INFO_BETA
4
public static final int
INFO_C
2
public static final int
INFO_DIMENSIONS
6
public static final int
INFO_GAMMA
5
public static final float
SLOP
0.019999999552965164f
private static final float
SLOP1
0.9800000190734863f
protected static final float
toRadians
0.01745329238474369f
-
org.jmol.util.TempArray Modifier and Type Constant Field Value private static final int
freeEnumSize
2
private static final int
freePointsSize
6
private static final int
freeScreensSize
6
-
org.jmol.util.Tensor Modifier and Type Constant Field Value private static final float
CHEMICAL_SHIFT_ANISOTROPY_FACTOR
0.009999999776482582f
private static final java.lang.String
infoList
";.............;eigenvalues..;eigenvectors.;asymmatrix...;symmatrix....;value........;isotropy.....;anisotropy...;asymmetry....;eulerzyz.....;eulerzxz.....;quaternion...;indices......;string.......;type.........;id...........;span.........;skew........."
private static final float
INTERACTION_FACTOR
0.03999999910593033f
private static final java.lang.String
KNOWN_TYPES
";iso........;adp........;tls-u......;tls-r......;ms.........;efg........;isc........;charge.....;quadrupole.;raman......;csa........"
private static final float
MAGNETIC_SUSCEPTIBILITY_FACTOR
0.009999999776482582f
public static final int
TYPE_ADP
1
public static final int
TYPE_CHARGE
7
public static final int
TYPE_CSA
10
public static final int
TYPE_EFG
5
public static final int
TYPE_ISC
6
public static final int
TYPE_ISO
0
public static final int
TYPE_MS
4
public static final int
TYPE_OTHER
-1
public static final int
TYPE_QUADRUPOLE
8
public static final int
TYPE_RAMAN
9
public static final int
TYPE_TLS_R
3
public static final int
TYPE_TLS_U
2
-
org.jmol.util.Vibration Modifier and Type Constant Field Value protected static final double
twoPI
6.283185307179586
public static final int
TYPE_SPIN
-2
public static final int
TYPE_VIBRATION
-1
-
org.jmol.viewer.ActionManager Modifier and Type Constant Field Value public static final int
ACTION_assignNew
0
public static final int
ACTION_center
1
public static final int
ACTION_clickFrank
2
public static final int
ACTION_connectAtoms
3
public static final int
ACTION_count
47
public static final int
ACTION_deleteAtom
4
public static final int
ACTION_deleteBond
5
public static final int
ACTION_depth
6
public static final int
ACTION_dragAtom
7
public static final int
ACTION_dragDrawObject
8
public static final int
ACTION_dragDrawPoint
9
public static final int
ACTION_dragLabel
10
public static final int
ACTION_dragMinimize
11
public static final int
ACTION_dragMinimizeMolecule
12
public static final int
ACTION_dragSelected
13
public static final int
ACTION_dragZ
14
public static final int
ACTION_multiTouchSimulation
15
public static final int
ACTION_navTranslate
16
public static final int
ACTION_pickAtom
17
public static final int
ACTION_pickIsosurface
18
public static final int
ACTION_pickLabel
19
public static final int
ACTION_pickMeasure
20
public static final int
ACTION_pickNavigate
21
public static final int
ACTION_pickPoint
22
public static final int
ACTION_popupMenu
23
public static final int
ACTION_reset
24
public static final int
ACTION_rotate
25
public static final int
ACTION_rotateBranch
26
public static final int
ACTION_rotateSelected
27
public static final int
ACTION_rotateZ
28
public static final int
ACTION_rotateZorZoom
29
public static final int
ACTION_select
30
public static final int
ACTION_selectAndDrag
31
public static final int
ACTION_selectAndNot
32
public static final int
ACTION_selectNone
33
public static final int
ACTION_selectOr
34
public static final int
ACTION_selectToggle
35
public static final int
ACTION_selectToggleExtended
36
public static final int
ACTION_setMeasure
37
public static final int
ACTION_slab
38
public static final int
ACTION_slabAndDepth
39
public static final int
ACTION_slideZoom
40
public static final int
ACTION_spinDrawObjectCCW
41
public static final int
ACTION_spinDrawObjectCW
42
public static final int
ACTION_stopMotion
43
public static final int
ACTION_swipe
44
public static final int
ACTION_translate
45
public static final int
ACTION_wheelZoom
46
public static final float
DEFAULT_GESTURE_SWIPE_FACTOR
1.0f
public static final float
DEFAULT_MOUSE_DRAG_FACTOR
1.0f
public static final float
DEFAULT_MOUSE_WHEEL_FACTOR
1.149999976158142f
private static final long
MAX_DOUBLE_CLICK_MILLIS
700L
protected static final long
MININUM_GESTURE_DELAY_MILLISECONDS
10L
public static final int
PICKING_ASSIGN_ATOM
32
public static final int
PICKING_ASSIGN_BOND
33
public static final int
PICKING_CENTER
3
public static final int
PICKING_CONNECT
24
public static final int
PICKING_DELETE_ATOM
7
public static final int
PICKING_DELETE_BOND
8
public static final int
PICKING_DRAG_ATOM
28
public static final int
PICKING_DRAG_LIGAND
36
public static final int
PICKING_DRAG_MINIMIZE
29
public static final int
PICKING_DRAG_MINIMIZE_MOLECULE
30
public static final int
PICKING_DRAG_MODEL
37
public static final int
PICKING_DRAG_MOLECULE
27
public static final int
PICKING_DRAG_SELECTED
26
public static final int
PICKING_DRAW
4
public static final int
PICKING_IDENTIFY
1
public static final int
PICKING_IDENTIFY_BOND
35
public static final int
PICKING_INVERT_STEREO
31
public static final int
PICKING_LABEL
2
public static final int
PICKING_MEASURE
18
public static final int
PICKING_MEASURE_ANGLE
20
public static final int
PICKING_MEASURE_DISTANCE
19
public static final int
PICKING_MEASURE_SEQUENCE
22
public static final int
PICKING_MEASURE_TORSION
21
public static final int
PICKING_MK_RESET
-1
public static final int
PICKING_NAVIGATE
23
public static final int
PICKING_OFF
0
public static final int
PICKING_ROTATE_BOND
34
public static final int
PICKING_SELECT_ATOM
9
public static final int
PICKING_SELECT_CHAIN
11
public static final int
PICKING_SELECT_ELEMENT
17
public static final int
PICKING_SELECT_GROUP
10
public static final int
PICKING_SELECT_MODEL
16
public static final int
PICKING_SELECT_MOLECULE
12
public static final int
PICKING_SELECT_POLYMER
13
public static final int
PICKING_SELECT_SITE
15
public static final int
PICKING_SELECT_STRUCTURE
14
public static final int
PICKING_SPIN
5
public static final int
PICKING_STRUTS
25
public static final int
PICKING_SYMMETRY
6
public static final int
PICKINGSTYLE_MEASURE_OFF
5
public static final int
PICKINGSTYLE_MEASURE_ON
4
public static final int
PICKINGSTYLE_SELECT_CHIME
0
public static final int
PICKINGSTYLE_SELECT_DRAG
3
public static final int
PICKINGSTYLE_SELECT_JMOL
0
public static final int
PICKINGSTYLE_SELECT_PFAAT
2
public static final int
PICKINGSTYLE_SELECT_RASMOL
1
private static final int
SLIDE_ZOOM_X_PERCENT
98
public static final int
XY_RANGE
10
-
org.jmol.viewer.AnimationManager Modifier and Type Constant Field Value static final int
FRAME_FIRST
-1
static final int
FRAME_LAST
1
static final int
MODEL_CURRENT
0
-
org.jmol.viewer.FileManager Modifier and Type Constant Field Value private static final java.lang.String
DELPHI_BINARY_MAGIC_NUMBER
"\u0014\u0000\u0000\u0000"
public static final java.lang.String
JPEG_CONTINUE_STRING
" #Jmol...\u0000"
public static final java.lang.String
PMESH_BINARY_MAGIC_NUMBER
"PM\u0001\u0000"
-
org.jmol.viewer.JC Modifier and Type Constant Field Value public static final java.lang.String
ADD_HYDROGEN_TITLE
"Viewer.AddHydrogens"
public static final java.lang.String
allowedQuaternionFrames
"RC;RP;a;b;c;n;p;q;x;"
public static final int
ALPHA_CARBON_VISIBILITY_FLAG
1040384
public static final float
ANGSTROMS_PER_BOHR
0.529177188873291f
public static final int
argbsIsosurfaceNegative
-6283184
public static final int
argbsIsosurfacePositive
-11525984
public static final byte
ATOMID_ALPHA_CARBON
2
public static final int
ATOMID_ALPHA_ONLY_MASK
4
public static final byte
ATOMID_AMINO_NITROGEN
1
public static final byte
ATOMID_C1_PRIME
12
public static final byte
ATOMID_C2
33
public static final byte
ATOMID_C2_PRIME
11
public static final byte
ATOMID_C3_PRIME
9
public static final byte
ATOMID_C4
35
public static final byte
ATOMID_C4_PRIME
8
public static final byte
ATOMID_C5
36
public static final byte
ATOMID_C5_PRIME
7
public static final byte
ATOMID_C5M
45
public static final byte
ATOMID_C6
37
public static final byte
ATOMID_C7
49
public static final byte
ATOMID_C8
40
public static final byte
ATOMID_CARBONYL_CARBON
3
public static final byte
ATOMID_CARBONYL_OD1
14
public static final byte
ATOMID_CARBONYL_OD2
15
public static final byte
ATOMID_CARBONYL_OE1
16
public static final byte
ATOMID_CARBONYL_OE2
17
public static final byte
ATOMID_CARBONYL_OXYGEN
4
public static final int
ATOMID_DISTINGUISHING_ATOM_MAX
14
public static final byte
ATOMID_H3T_TERMINUS
88
public static final byte
ATOMID_H5T_TERMINUS
72
public static final byte
ATOMID_HO3_PRIME
89
public static final byte
ATOMID_HO5_PRIME
90
public static final byte
ATOMID_N1
32
public static final byte
ATOMID_N2
43
public static final byte
ATOMID_N3
34
public static final byte
ATOMID_N4
42
public static final byte
ATOMID_N6
44
public static final byte
ATOMID_N7
39
public static final byte
ATOMID_N9
41
public static final int
ATOMID_NUCLEIC_MASK
8128
public static final byte
ATOMID_NUCLEIC_PHOSPHORUS
13
public static final byte
ATOMID_O1
5
public static final byte
ATOMID_O1P
74
public static final byte
ATOMID_O2
38
public static final byte
ATOMID_O2_PRIME
79
public static final byte
ATOMID_O2P
76
public static final byte
ATOMID_O3_PRIME
10
public static final byte
ATOMID_O4
47
public static final byte
ATOMID_O4_PRIME
78
public static final byte
ATOMID_O5_PRIME
6
public static final byte
ATOMID_O5T_TERMINUS
73
public static final byte
ATOMID_O6
46
public static final byte
ATOMID_OP1
75
public static final byte
ATOMID_OP2
77
public static final int
ATOMID_PHOSPHORUS_ONLY_MASK
8192
public static final int
ATOMID_PROTEIN_MASK
14
public static final byte
ATOMID_S4
48
public static final byte
ATOMID_TERMINATING_OXT
64
public static final int
AXES_DEFAULT_FONTSIZE
16
public static final java.lang.String
CACTUS_FILE_TYPES
";alc;cdxml;cerius;charmm;cif;cml;ctx;gjf;gromacs;hyperchem;jme;maestro;mol;mol2;sybyl2;mrv;pdb;sdf;sdf3000;sln;smiles;xyz"
public static final int
CIP_CHIRALITY_AXIAL_FLAG
16
public static final int
CIP_CHIRALITY_CANTDETERMINE
7
public static final int
CIP_CHIRALITY_EZ_FLAG
4
public static final int
CIP_CHIRALITY_m_FLAG
25
public static final int
CIP_CHIRALITY_M_FLAG
17
public static final int
CIP_CHIRALITY_NAME_MASK
224
public static final int
CIP_CHIRALITY_NAME_OFFSET
5
public static final int
CIP_CHIRALITY_NONE
3
public static final int
CIP_CHIRALITY_p_FLAG
26
public static final int
CIP_CHIRALITY_P_FLAG
18
public static final int
CIP_CHIRALITY_PSEUDO_FLAG
8
public static final int
CIP_CHIRALITY_r_FLAG
9
public static final int
CIP_CHIRALITY_R_FLAG
1
public static final int
CIP_CHIRALITY_s_FLAG
10
public static final int
CIP_CHIRALITY_S_FLAG
2
public static final int
CIP_CHIRALITY_seqcis_FLAG
13
public static final int
CIP_CHIRALITY_seqCis_FLAG
5
public static final int
CIP_CHIRALITY_seqtrans_FLAG
14
public static final int
CIP_CHIRALITY_seqTrans_FLAG
6
public static final int
CIP_CHIRALITY_UNKNOWN
0
public static final java.lang.String
copyright
"(C) 2015 Jmol Development"
public static final short
DEFAULT_BOND_MILLIANGSTROM_RADIUS
150
public static final float
DEFAULT_BOND_RADIUS
0.15000000596046448f
public static final float
DEFAULT_BOND_TOLERANCE
0.44999998807907104f
public static final java.lang.String
DEFAULT_DRAG_DROP_SCRIPT
"zap; load SYNC \"%FILE\";if (%ALLOWCARTOONS && _loadScript == \'\' && defaultLoadScript == \'\' && _filetype == \'Pdb\') {if ({(protein or nucleic)&*/1.1} && {*/1.1}[1].groupindex != {*/1.1}[0].groupindex){select protein or nucleic;cartoons only;}if ({visible && cartoons > 0}){color structure}else{wireframe -0.1};if (!{visible}){spacefill 23%};select *}"
public static final java.lang.String
DEFAULT_FONTFACE
"SansSerif"
public static final java.lang.String
DEFAULT_FONTSTYLE
"Plain"
public static final java.lang.String
DEFAULT_HELP_PATH
"https://chemapps.stolaf.edu/jmol/docs/index.htm"
public static final float
DEFAULT_MAX_CONNECT_DISTANCE
1.0E8f
public static final float
DEFAULT_MIN_BOND_DISTANCE
0.4000000059604645f
public static final float
DEFAULT_MIN_CONNECT_DISTANCE
0.10000000149011612f
public static final int
DEFAULT_PERCENT_VDW_ATOM
23
public static final float
DEFAULT_STRUT_RADIUS
0.30000001192092896f
public static final java.lang.String
defaultMacroDirectory
"https://chemapps.stolaf.edu/jmol/macros"
public static final int
DNA_MASK
65480
public static final int
ECHO_BOTTOM
1
public static final int
ECHO_MIDDLE
2
public static final int
ECHO_TOP
0
public static final int
ECHO_XY
3
public static final int
ECHO_XYZ
4
public static final java.lang.String
EMBEDDED_SCRIPT_TAG
"**** Jmol Embedded Script ****"
public static final float
ENC_CALC_MAX_DIST
3.0f
public static final int
ENV_CALC_MAX_LEVEL
3
public static final java.lang.String
EXPORT_DRIVER_LIST
"Idtf;Maya;Povray;Vrml;X3d;Stl;Tachyon;Obj"
public static final int
GROUPID_AMINO_MAX
24
public static final int
GROUPID_ARGININE
2
public static final int
GROUPID_ASPARAGINE
3
public static final int
GROUPID_ASPARTATE
4
public static final int
GROUPID_CYSTEINE
5
public static final int
GROUPID_GLUTAMATE
7
public static final int
GROUPID_GLUTAMINE
6
public static final int
GROUPID_HISTIDINE
9
private static final int
GROUPID_ION_MAX
48
private static final int
GROUPID_ION_MIN
46
public static final int
GROUPID_LYSINE
12
public static final int
GROUPID_NUCLEIC_MAX
42
public static final int
GROUPID_PROLINE
15
public static final int
GROUPID_SOLVENT_MIN
45
public static final int
GROUPID_TRYPTOPHAN
19
public static final int
GROUPID_WATER
42
public static final java.lang.String
IMAGE_OR_SCENE
";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;scene;"
public static final java.lang.String
IMAGE_TYPES
";jpg;jpeg;jpg64;jpeg64;gif;gift;pdf;ppm;png;pngj;pngt;"
public static final java.lang.String
JPEG_EXTENSIONS
";jpg;jpeg;jpg64;jpeg64;"
public static final int
JSV_CLOSE
77
public static final int
JSV_NOT
-1
public static final int
JSV_SELECT
14
public static final int
JSV_SEND_C13SIMULATE
35
public static final int
JSV_SEND_H1SIMULATE
28
public static final int
JSV_SEND_JDXMOL
0
public static final int
JSV_SETPEAKS
7
public static final int
JSV_STRUCTURE
21
private static final int
LABEL_CENTERED
256
public static final int
LABEL_DEFAULT_FONTSIZE
13
public static final int
LABEL_DEFAULT_X_OFFSET
4
public static final int
LABEL_DEFAULT_Y_OFFSET
4
private static final int
LABEL_EXPLICIT
64
public static final int
LABEL_FLAGS
63
private static final int
LABEL_FLAGX_OFFSET_SHIFT
21
private static final int
LABEL_FLAGY_OFFSET_SHIFT
11
public static final int
LABEL_MAXIMUM_FONTSIZE
63
public static final int
LABEL_MINIMUM_FONTSIZE
6
private static final int
LABEL_OFFSET_MASK
1023
public static final int
LABEL_OFFSET_MAX
500
public static final int
LABEL_POINTER_BACKGROUND
2
private static final int
LABEL_POINTER_FLAGS
3
public static final int
LABEL_POINTER_NONE
0
public static final int
LABEL_POINTER_ON
1
private static final int
LABEL_ZPOS_FLAGS
48
public static final int
LABEL_ZPOS_FRONT
32
public static final int
LABEL_ZPOS_GROUP
16
static final java.lang.String
legacyResolver
"cactus.nci.nih.gov/chemical/structure"
public static final java.lang.String
LOAD_ATOM_DATA_TYPES
";xyz;vxyz;vibration;temperature;occupancy;partialcharge;"
public static final short
madMultipleBondSmallMaximum
500
public static final int
MAXIMUM_AUTO_BOND_COUNT
20
public static final int
MEASURE_DEFAULT_FONTSIZE
18
public static final float
MINIMIZE_FIXED_RANGE
5.0f
public static final java.lang.String
MODELKIT_ZAP_STRING
"5\n\nC 0 0 0\nH .63 .63 .63\nH -.63 -.63 .63\nH -.63 .63 -.63\nH .63 -.63 -.63"
public static final java.lang.String
MODELKIT_ZAP_TITLE
"Jmol Model Kit"
public static final int
MOUSE_NONE
-1
public static final byte
MULTIBOND_ALWAYS
3
public static final byte
MULTIBOND_NEVER
0
public static final byte
MULTIBOND_NOTSMALL
2
public static final byte
MULTIBOND_WIREFRAME
1
public static final int
NBO_CONFIG
70
public static final int
NBO_MODEL
42
public static final int
NBO_RUN
49
public static final int
NBO_SEARCH
63
public static final java.lang.String
NBO_TYPES
";AO;;;;PNAO;;NAO;;;PNHO;;NHO;;;PNBO;;NBO;;;PNLMO;NLMO;;MO;;;;NO;;;;;;;;;;PRNBO;RNBO;;;;;;;;"
public static final int
NBO_VIEW
56
public static final java.lang.String
NOTE_SCRIPT_FILE
"NOTE: file recognized as a script file: "
public static final boolean
officialRelease
false
public static final java.lang.String
PDB_ANNOTATIONS
";dssr;rna3d;dom;val;"
public static final int
PURINE_MASK
153957
public static final int
PYRIMIDINE_MASK
108186
public static final float
radiansPerDegree
0.01745329238474369f
public static final java.lang.String
REPAINT_IGNORE
"\u0001## REPAINT_IGNORE ##"
public static final int
RNA_MASK
196663
public static final java.lang.String
SCRIPT_COMPLETED
"Script completed"
public static final java.lang.String
SCRIPT_EDITOR_IGNORE
"\u0001## EDITOR_IGNORE ##"
public static final int
SHAPE_AXES
34
public static final int
SHAPE_BACKBONE
9
public static final int
SHAPE_BALLS
0
public static final int
SHAPE_BBCAGE
32
public static final int
SHAPE_CARTOON
11
public static final int
SHAPE_CGO
23
public static final int
SHAPE_CONTACT
25
public static final int
SHAPE_DIPOLES
17
public static final int
SHAPE_DOTS
16
public static final int
SHAPE_DRAW
22
public static final int
SHAPE_ECHO
31
public static final int
SHAPE_ELLIPSOIDS
20
public static final int
SHAPE_FRANK
36
public static final int
SHAPE_GEOSURFACE
19
public static final int
SHAPE_HALOS
8
public static final int
SHAPE_HOVER
35
public static final int
SHAPE_HSTICKS
2
public static final int
SHAPE_ISOSURFACE
24
public static final int
SHAPE_LABELS
5
private static final int
SHAPE_LAST_ATOM_VIS_FLAG
26
public static final int
SHAPE_LCAOCARTOON
26
public static final int
SHAPE_MAX
37
public static final int
SHAPE_MAX_HAS_ID
32
public static final int
SHAPE_MAX_HAS_SETVIS
33
public static final int
SHAPE_MAX_MESH_COLLECTION
30
public static final int
SHAPE_MAX_SECONDARY
16
public static final int
SHAPE_MAX_SIZE_ZERO_ON_RESTRICT
21
public static final int
SHAPE_MAX_SPECIAL
23
public static final int
SHAPE_MAX_SURFACE
30
public static final int
SHAPE_MEASURES
6
public static final int
SHAPE_MESHRIBBON
13
public static final int
SHAPE_MIN_HAS_ID
21
public static final int
SHAPE_MIN_HAS_SETVIS
8
public static final int
SHAPE_MIN_SECONDARY
9
public static final int
SHAPE_MIN_SPECIAL
16
public static final int
SHAPE_MIN_SURFACE
24
public static final int
SHAPE_MO
27
public static final int
SHAPE_NBO
28
public static final int
SHAPE_PLOT3D
30
public static final int
SHAPE_PMESH
29
public static final int
SHAPE_POLYHEDRA
21
public static final int
SHAPE_RIBBONS
14
public static final int
SHAPE_ROCKETS
15
public static final int
SHAPE_SSSTICKS
3
public static final int
SHAPE_STARS
7
public static final int
SHAPE_STICKS
1
public static final int
SHAPE_STRANDS
12
public static final int
SHAPE_STRUTS
4
public static final int
SHAPE_TRACE
10
public static final int
SHAPE_UCCAGE
33
public static final int
SHAPE_VECTORS
18
public static final int
SMILES_2D
134217728
public static final int
SMILES_AROMATIC_DEFINED
128
public static final int
SMILES_AROMATIC_DOUBLE
512
public static final int
SMILES_AROMATIC_MMFF94
768
public static final int
SMILES_AROMATIC_PLANAR
1024
public static final int
SMILES_AROMATIC_STRICT
256
public static final int
SMILES_FIRST_MATCH_ONLY
8
public static final int
SMILES_GEN_ATOM_COMMENT
131072
public static final int
SMILES_GEN_BIO
1048576
public static final int
SMILES_GEN_BIO_ALLOW_UNMATCHED_RINGS
3145728
public static final int
SMILES_GEN_BIO_COMMENT
17825792
public static final int
SMILES_GEN_BIO_COV_CROSSLINK
5242880
public static final int
SMILES_GEN_BIO_HH_CROSSLINK
9437184
public static final int
SMILES_GEN_BIO_NOCOMMENTS
34603008
public static final int
SMILES_GEN_EXPLICIT_H_ALL
4096
public static final int
SMILES_GEN_EXPLICIT_H2_ONLY
8192
public static final int
SMILES_GEN_POLYHEDRAL
65536
public static final int
SMILES_GEN_TOPOLOGY
16384
public static final int
SMILES_GROUP_BY_MODEL
67108864
public static final int
SMILES_IGNORE_ATOM_CLASS
2048
public static final int
SMILES_IGNORE_STEREOCHEMISTRY
32
public static final int
SMILES_INVERT_STEREOCHEMISTRY
64
public static final int
SMILES_MAP_UNIQUE
128
public static final int
SMILES_NO_AROMATIC
16
public static final int
SMILES_TYPE_OPENSMARTS
7
public static final int
SMILES_TYPE_OPENSMILES
5
public static final int
SMILES_TYPE_SMARTS
2
public static final int
SMILES_TYPE_SMILES
1
public static final java.lang.String
STATE_VERSION_STAMP
"# Jmol state version "
public static final int
TEXT_ALIGN_CENTER
8
private static final int
TEXT_ALIGN_FLAGS
12
public static final int
TEXT_ALIGN_LEFT
4
public static final int
TEXT_ALIGN_NONE
0
public static final int
TEXT_ALIGN_RIGHT
12
private static final int
TEXT_ALIGN_SHIFT
2
public static final int
UNITID_ATOM
4
public static final int
UNITID_INSCODE
8
public static final int
UNITID_MODEL
1
public static final int
UNITID_RESIDUE
2
public static final int
UNITID_TRIM
16
public static final int
VIS_BACKBONE_FLAG
8192
public static final int
VIS_BALLS_FLAG
16
public static final int
VIS_BOND_FLAG
32
public static final int
VIS_CARTOON_FLAG
32768
public static final int
VIS_LABEL_FLAG
512
public static final int
XY_ZTOP
100
public static final java.lang.String
ZAP_TITLE
"zapped"
-
org.jmol.viewer.MouseState Modifier and Type Constant Field Value private static final int
MIN_DELAY_MS
20
-
org.jmol.viewer.org.jmol.viewer.OutputManager Modifier and Type Constant Field Value protected static final java.lang.String
SCENE_TAG
"###scene.spt###"
-
org.jmol.viewer.PropertyManager Modifier and Type Constant Field Value private static final java.lang.String
atomExpression
"<atom selection>"
private static final int
PROP_ANIMATION_INFO
5
private static final int
PROP_APPLET_INFO
0
private static final int
PROP_ATOM_INFO
14
private static final int
PROP_AUXILIARY_INFO
24
private static final int
PROP_BOND_INFO
15
private static final int
PROP_BOUNDBOX_INFO
25
private static final int
PROP_CENTER_INFO
10
private static final int
PROP_CHAIN_INFO
16
private static final int
PROP_CIF_INFO
45
private static final int
PROP_CONSOLE_TEXT
37
private static final int
PROP_COUNT
47
private static final int
PROP_DATA_INFO
26
private static final int
PROP_DOM_INFO
42
private static final int
PROP_ERROR_MESSAGE
33
private static final int
PROP_EVALUATE
28
private static final int
PROP_EXTRACT_MODEL
20
private static final int
PROP_FILE_INFO
32
private static final int
PROP_FILECONTENTS
4
private static final int
PROP_FILECONTENTS_PATH
3
private static final int
PROP_FILEHEADER
2
private static final int
PROP_FILENAME
1
private static final int
PROP_IMAGE
27
private static final int
PROP_ISOSURFACE_DATA
36
private static final int
PROP_ISOSURFACE_INFO
35
private static final int
PROP_JMOL_STATUS
21
private static final int
PROP_JMOL_VIEWER
22
private static final int
PROP_JSPECVIEW
38
private static final int
PROP_LIGAND_INFO
7
private static final int
PROP_MEASUREMENT_INFO
9
private static final int
PROP_MENU
29
private static final int
PROP_MESSAGE_QUEUE
23
private static final int
PROP_MINIMIZATION_INFO
30
private static final int
PROP_MODEL_INFO
6
private static final int
PROP_MODELKIT_INFO
46
private static final int
PROP_MOLECULE_INFO
18
private static final int
PROP_MOUSE_INFO
34
private static final int
PROP_NMR_INFO
40
private static final int
PROP_ORIENTATION_INFO
11
private static final int
PROP_POINTGROUP_INFO
31
private static final int
PROP_POLYMER_INFO
17
private static final int
PROP_SCRIPT_QUEUE_INFO
39
private static final int
PROP_SERVICE
44
private static final int
PROP_SHAPE_INFO
8
private static final int
PROP_STATE_INFO
19
private static final int
PROP_TRANSFORM_INFO
12
private static final int
PROP_VAL_INFO
43
private static final int
PROP_VAR_INFO
41
-
org.jmol.viewer.SelectionManager Modifier and Type Constant Field Value private static final int
FALSE
0
private static final int
TRUE
1
private static final int
UNKNOWN
-1
-
org.jmol.viewer.StateCreator Modifier and Type Constant Field Value private static final int
MAX_ACTION_UNDO
100
-
org.jmol.viewer.StateManager Modifier and Type Constant Field Value public static final int
OBJ_AXIS1
1
public static final int
OBJ_AXIS2
2
public static final int
OBJ_AXIS3
3
public static final int
OBJ_BACKGROUND
0
public static final int
OBJ_BOUNDBOX
4
public static final int
OBJ_FRANK
6
public static final int
OBJ_MAX
7
public static final int
OBJ_UNITCELL
5
private static final java.lang.String
objectNameList
"background axis1 axis2 axis3 boundbox unitcell frank "
-
org.jmol.viewer.StatusManager Modifier and Type Constant Field Value public static final int
SYNC_DISABLE
3
public static final int
SYNC_DRIVER
1
public static final int
SYNC_ENABLE
4
public static final int
SYNC_OFF
0
public static final int
SYNC_SLAVE
2
public static final int
SYNC_STEREO
5
-
org.jmol.viewer.TransformManager Modifier and Type Constant Field Value static final float
DEFAULT_CAMERA_DEPTH
3.0f
static final int
DEFAULT_NAV_FPS
10
static final boolean
DEFAULT_PERSPECTIVE_DEPTH
true
static final int
DEFAULT_PERSPECTIVE_MODEL
11
static final int
DEFAULT_SPIN_FPS
30
static final int
DEFAULT_SPIN_Y
30
public static final int
DEFAULT_STEREO_DEGREES
-5
public static final float
DEFAULT_VISUAL_RANGE
5.0f
public static final double
degreesPerRadian
57.29577951308232
public static final int
MAXIMUM_ZOOM_PERCENTAGE
200000
private static final int
MAXIMUM_ZOOM_PERSPECTIVE_DEPTH
10000
public static final int
MODE_NAVIGATION
1
public static final int
MODE_PERSPECTIVE_PYMOL
2
public static final int
MODE_STANDARD
0
public static final int
NAV_MODE_IGNORE
-2
public static final int
NAV_MODE_NEWXY
2
public static final int
NAV_MODE_NEWXYZ
3
public static final int
NAV_MODE_NEWZ
4
public static final int
NAV_MODE_NONE
0
public static final int
NAV_MODE_RESET
1
public static final int
NAV_MODE_ZOOMED
-1
-
org.jmol.viewer.TransformManager4D Modifier and Type Constant Field Value private static final int
MODE_3D
0
private static final int
MODE_4D_WX
1
private static final int
MODE_4D_WY
2
private static final int
MODE_4D_WZ
3
-
org.jmol.viewer.Viewer Modifier and Type Constant Field Value public static final int
MIN_ADDH
8
public static final int
MIN_HAVE_FIXED
2
public static final int
MIN_NO_RANGE
16
public static final int
MIN_QUICK
4
public static final int
MIN_SILENT
1
public static final boolean
nullDeletedAtoms
false
public static final int
REFRESH_REPAINT
1
public static final int
REFRESH_REPAINT_NO_MOTION_ONLY
6
public static final int
REFRESH_SEND_WEBGL_NEW_ORIENTATION
7
public static final int
REFRESH_SYNC
2
public static final int
REFRESH_SYNC_MASK
3
public static final java.lang.String
SYNC_GRAPHICS_MESSAGE
"GET_GRAPHICS"
public static final java.lang.String
SYNC_NO_GRAPHICS_MESSAGE
"SET_GRAPHICS_OFF"
-
org.jmol.viewer.binding.Binding Modifier and Type Constant Field Value public static final int
ALT
8
public static final int
BUTTON_MASK
28
public static final int
BUTTON_MODIFIER_MASK
63
public static final int
CLICK
32768
public static final int
COUNT_MASK
768
public static final int
CTRL
2
public static final int
CTRL_ALT
10
public static final int
CTRL_SHIFT
3
public static final int
DOUBLE
512
public static final int
DOWN
4096
public static final int
DRAG
8192
public static final int
LEFT
16
public static final int
MAC_COMMAND
20
public static final int
MIDDLE
8
public static final int
MODE_MASK
61440
public static final int
RIGHT
4
public static final int
SHIFT
1
public static final int
SINGLE
256
public static final int
UP
16384
public static final int
WHEEL
32
org.openscience.*
-
org.openscience.jmol.app.janocchio.CoupleTable Modifier and Type Constant Field Value final double
degtorad
0.017453292519943295
-
org.openscience.jmol.app.janocchio.Measure Modifier and Type Constant Field Value static final int
TYPE_DISTANCE
0
static final int
TYPE_EXP_NOE
0
static final int
TYPE_J
1
static final int
TYPE_NOE
2
-
org.openscience.jmol.app.janocchio.Nmr Modifier and Type Constant Field Value public static final java.lang.String
VERSION
"0.1.0"
-
org.openscience.jmol.app.janocchio.NMR_JmolPanel Modifier and Type Constant Field Value public static final java.lang.String
chemFileProperty
"chemFile"
private static final java.lang.String
detachAppletAction
"NMR.detachApplet"
private static final java.lang.String
jumpBestFrameAction
"NMR.jumpBestFrame"
private static final java.lang.String
labelNmrAction
"NMR.labelNmr"
static final int
MIN_SIZE
600
private static final java.lang.String
readNamfisAction
"NMR.readNamfis"
private static final java.lang.String
readNmrAction
"NMR.readNmr"
private static final java.lang.String
reattachAppletAction
"NMR.reattachApplet"
private static final java.lang.String
saveNmrAction
"NMR.saveNmr"
private static final java.lang.String
writeNamfisAction
"NMR.writeNamfis"
-
org.openscience.jmol.app.janocchio.TableSorter Modifier and Type Constant Field Value public static final int
ASCENDING
1
public static final int
DESCENDING
-1
public static final int
NOT_SORTED
0
-
org.openscience.jmol.app.jmolpanel.AtomSetChooser Modifier and Type Constant Field Value private static final float
AMPLITUDE_MAX
1.0f
private static final float
AMPLITUDE_PRECISION
0.009999999776482582f
private static final float
AMPLITUDE_VALUE
0.5f
static final java.lang.String
COLLECTION
"collection"
static final java.lang.String
FF
"ff"
private static final int
FPS_MAX
30
static final java.lang.String
NEXT
"next"
static final java.lang.String
PAUSE
"pause"
private static final float
PERIOD_MAX
1.0f
private static final float
PERIOD_PRECISION
0.0010000000474974513f
private static final float
PERIOD_VALUE
0.5f
static final java.lang.String
PLAY
"play"
static final java.lang.String
PREVIOUS
"prev"
private static final int
RADIUS_MAX
19
private static final int
RADIUS_VALUE
3
static final java.lang.String
REWIND
"rewind"
static final java.lang.String
SAVE
"save"
private static final float
SCALE_MAX
2.0f
private static final float
SCALE_PRECISION
0.009999999776482582f
private static final float
SCALE_VALUE
1.0f
static final java.lang.String
VECTOR
"vector"
-
org.openscience.jmol.app.jmolpanel.GaussianDialog Modifier and Type Constant Field Value private static final java.lang.String
DEFAULT_BASIS
"3-21G**"
private static final java.lang.String
DEFAULT_CHARGE
"0"
private static final java.lang.String
DEFAULT_METHOD
"HF"
private static final java.lang.String
DEFAULT_MULT
"1"
private static final java.lang.String
DFT_LIST
"LSDA BLYP BP86 BPW91 OLYP OP86 OPW91 PBEPBE VSXC HCTH93 NCTH147 HCTH407 TPSSTPSS B3LYP B3PW91"
private static final java.lang.String
NOBASIS_LIST
"AM1 PM3 CNDO INDO MNDO MINDO3 ZINDO UFF AMBER DREIDING Huckel"
-
org.openscience.jmol.app.jmolpanel.JmolPanel Modifier and Type Constant Field Value protected static final java.lang.String
aboutAction
"about"
protected static final java.lang.String
atomsetchooserAction
"atomsetchooser"
static final java.lang.String
chemFileProperty
"chemFile"
protected static final java.lang.String
closeAction
"close"
protected static final java.lang.String
consoleAction
"console"
protected static final java.lang.String
copyImageActionProperty
"copyImage"
protected static final java.lang.String
copyScriptActionProperty
"copyScript"
protected static final java.lang.String
creditsAction
"credits"
protected static final java.lang.String
EDITOR_WINDOW_NAME
"ScriptEditor"
protected static final java.lang.String
editorAction
"editor"
protected static final java.lang.String
exitAction
"exit"
protected static final java.lang.String
exportActionProperty
"export"
protected static final java.lang.String
FILE_OPEN_WINDOW_NAME
"FileOpen"
protected static final java.lang.String
gaussianAction
"gauss"
protected static final java.lang.String
newAction
"new"
protected static final java.lang.String
newwinAction
"newwin"
protected static final java.lang.String
openAction
"open"
protected static final java.lang.String
openmolAction
"openmol"
protected static final java.lang.String
openpdbAction
"openpdb"
protected static final java.lang.String
openurlAction
"openurl"
public static final int
OUTSOCKET
2
protected static final java.lang.String
pasteClipboardActionProperty
"pasteClipboard"
protected static final java.lang.String
povrayActionProperty
"povray"
protected static final java.lang.String
printActionProperty
"print"
protected static final java.lang.String
recentFilesAction
"recentFiles"
protected static final java.lang.String
resizeAction
"resize"
protected static final java.lang.String
SCRIPT_WINDOW_NAME
"ScriptWindow"
protected static final java.lang.String
SURFACETOOL_WINDOW_NAME
"SurfaceToolWindow"
protected static final java.lang.String
surfaceToolActionProperty
"surfaceTool"
protected static final java.lang.String
toWebActionProperty
"toweb"
private final java.lang.String
TYPES
"reply.....quit......command...move......rotate....translate.zoom......sync......touch....."
protected static final java.lang.String
uguideAction
"uguide"
protected static final java.lang.String
WEB_MAKER_WINDOW_NAME
"JmolWebPageMaker"
protected static final java.lang.String
whatsnewAction
"whatsnew"
protected static final java.lang.String
writeActionProperty
"write"
-
org.openscience.jmol.app.jmolpanel.org.openscience.jmol.app.jmolpanel.RecentFilesDialog Modifier and Type Constant Field Value private static final int
MAX_FILES
10
-
org.openscience.jmol.app.jmolpanel.Splash Modifier and Type Constant Field Value private static final int
BORDERSIZE
10
private static final int
STATUSSIZE
10
-
org.openscience.jmol.app.jmolpanel.StatusBar Modifier and Type Constant Field Value public static final int
STATUS_COORD
1
public static final int
STATUS_TEXT
2
public static final int
STATUS_TIME
3
-
org.openscience.jmol.app.jmolpanel.console.AppConsole Modifier and Type Constant Field Value public static final java.lang.String
ALL_BUTTONS
"Editor Variables Clear History State UndoRedo Close Font Help"
-
org.openscience.jmol.app.jsonkiosk.JsonNioClient.TouchHandler Modifier and Type Constant Field Value public static final int
swipeCount
2
public static final float
swipeCutoff
100.0f
public static final float
swipeDelayMs
3000.0f
public static final float
swipeFactor
30.0f
-
org.openscience.jmol.app.jsonkiosk.JsonNioServer Modifier and Type Constant Field Value public static final int
INSOCKET
1
public static final int
OUTSOCKET
2
-
org.openscience.jmol.app.jsonkiosk.JsonNioService Modifier and Type Constant Field Value private final java.lang.String
ROLES
"out.......in........quit......"
public static final int
VERSION
1
-
org.openscience.jmol.app.surfacetool.SurfaceTool Modifier and Type Constant Field Value static final int
CIRCLE_FRACTION
3
static final int
DEGREES
0
static final int
GRADIANS
2
static final int
RADIANS
1
static final int
UNITS_PI
4
-
org.openscience.jmol.app.webexport.Test Modifier and Type Constant Field Value private static final long
serialVersionUID
1L
-
org.openscience.jmol.app.webexport.WebExport Modifier and Type Constant Field Value static final java.lang.String
chemappsPath
"http://chemapps.stolaf.edu/jmol/jsmol"
private static final int
IN_JMOL
1
private static final int
STAND_ALONE
0